cctbx multi-platform build 2004_06_14

Build tag: 2004_06_14_0239

Self-extracting binary distributions

cctbx+Python bundles are larger but completely self-contained.
cctbx only bundles use the Python that ships with the OS or require that a matching Python version is installed separately.
Use [stream] if your browser displays the [direct] download in a text window instead of saving it to a file.
Use cctbx.python to run scripts. The plain python command is not longer supported to avoid confusion with the Python version provided by some operating systems.

Platform	cctbx+Python	cctbx only
Mac OS 10.2.8 [Notes] Python 2.3	Python 2.3 must be installed separately	[stream][direct] 11.2 MB
Mac OS 10.3.9 [Notes]	Python 2.3 ships with OS	[stream][direct] 12.7 MB
Red Hat 8.0	Python 2.2.1 ships with OS	[stream][direct] 6.8 MB
Red Hat 8.0 Python 2.3.4	[stream][direct] 18.0 MB	[stream][direct] 6.8 MB
Red Hat 9.0	Python 2.2.2 ships with OS	[stream][direct] 6.8 MB
Red Hat 9.0 Python 2.3.4	[stream][direct] 17.7 MB	[stream][direct] 6.8 MB
Red Hat WS 3	Python 2.2.3 ships with OS	[stream][direct] 6.8 MB
Windows 2000/XP Python 2.2.3	A bundle with a more recent Python is available	[stream][direct] 5.0 MB
Windows 2000/XP Python 2.3.4	[stream][direct] 8.2 MB	[stream][direct] 5.0 MB

[Other platforms]

Download the self-extracting binary distribution for your platform to any new, empty directory. Under Unix selfx bundles are installed with the perl command (which is available by default on all supported platforms), for example:

    perl cctbx_redhat80.selfx

Under Windows exe distributions are installed simply by running them.

The installer must be run on the platform where it is used. The installed package may be used over the network, but only if the pathnames to the installation directory are identical on the server and the client.

Uninstalling a bundle is as easy as using rm -rf * in the installation directory under Unix or dragging the installation directory to the Recycle Bin under Windows. The Windows registry is not modified by the installation.

[Installation overview]

Self-extracting cctbx and Python 2.3.4 sources for Unix

cctbx_python_234_bundle.selfx [stream][direct]
20.0 MB

Download the file and run the following command in any new, empty directory:

    perl cctbx_python_234_bundle.selfx

This installs Python 2.3.4 and all cctbx modules from scratch.

The install script will prompt for the number of available CPUs. To avoid the prompt (e.g. for scripting the installation), add the number of available CPUs to the command line. E.g.:

    perl cctbx_python_234_bundle.selfx 4

Alternative for manual installation:
cctbx_python_234_bundle.tar.gz [stream][direct]
20.0 MB
[Installation instructions]

Self-extracting cctbx sources for Unix

cctbx_bundle.selfx [stream][direct]
11.8 MB

Download the file and run the following command in any new, empty directory:

    perl cctbx_bundle.selfx

This installs all cctbx modules from scratch. Python 2.2.1 or higher must be pre-installed on the target machine. Known to work under Redhat 8.0 or higher with the Python version that ships with the operating system (/usr/bin/python). The first python on PATH is used. To install with a different, specific python, add the full path to the command line, e.g.:

    perl cctbx_bundle.selfx /usr/local/bin/python

Alternative for manual installation:
cctbx_bundle.tar.gz [stream][direct]
11.8 MB
[Installation instructions]

Changes

iotbx.xplor.map:
  - bug fix in gridding.is_compatible_flex_grid()
  - second writer for P1 maps
  - injection of new cctbx.miller.fft_map.as_xplor_map()

iotbx.options_parser:
  - new enable_resolutions() method to define --resolution, --low_resolution

cctbx.maptbx.peak_cluster_analysis:
  - new effective_resolution parameter, _accumulate_significant() function
    to support work with low-resolution data

cctbx.sgtbx.change_of_basis_op:
  - apply(miller_index): transformation of one Miller index

cctbx.sgtbx.search_symmetry:
  - continuous_shift_flags(assert_principal=True) for safety

cctbx/cctbx/examples/map_skewness.py:
  - reimplementation of randomize_phases() based on flex.random_double()

scitbx.array_family:
  - flex.bool.iselection() for conversion from flex.bool selection
    to flex.size_t selection
  - inplace +-*/% for array,array arguments

libtbx:
  - Unix command-line dispatchers: PYTHONPATH and LD_LIBRARY_PATH
    are restored if necessary
  - Support for completely self-contained Windows bundle (incl. Python)
  - new libtbx.path.abs_path_clean to support installation of Windows
    binary bundles in directories with spaces in the path name

The page at http://cci.lbl.gov/cctbx_build/ was redesigned.

Latest Boost CVS (2004_06_11_2046)