Build tag: 2005_08_18_0201

Self-extracting cctbx and Python 2.4.1 sources for Unix

cctbx_python_241_bundle.selfx [stream][direct]
25.8 MB

Download the file and run the following command in any new, empty directory:
    perl cctbx_python_241_bundle.selfx
This installs Python 2.4.1 and all cctbx modules from scratch.

The install script will prompt for the number of available CPUs. To avoid the prompt (e.g. for scripting the installation), add the number of available CPUs to the command line. E.g.:

    perl cctbx_python_241_bundle.selfx 4

Alternative for manual installation:
cctbx_python_241_bundle.tar.gz [Sorry, file not available.]
[Installation instructions]

Changes

************************************************************************
THE RESULTS OF THIS BUILD ARE PARTIALLY LOST DUE TO A HARD-DISK FAILURE.
SORRY!
************************************************************************

new mmtbx.xtriage command (Peter Zwart)

new mmtbx.scaling module (Peter Zwart)

cctbx.maptbx.abstract_interpolator:
  - new abstract interpolator handling code
  - get_[cartesian_crystallographic,
         fractional_crystallographic,
         non_crystallographic]_interpolator

mmtbx.geometry_minimization:
  - new option: --macro_cycles
  - new option: --write_pdb_rms_threshold
      writes PyMOL .pml file for viewing the progress of the minimization

iotbx.reflection_statistics:
  - bug fix: show twin laws with respect to the input unit cell (rather
    than the minimum cell)

cctbx.miller.array:
  - new map_correlation() method

cctbx.maptbx.closest_grid_point():
  - interface change: use map.accessor() instead of map to support
    maps with arbitrary data types

cctbx.maptbx:
  - new average_densities() function, based on code by Pavel Afonine

cctbx.sgtbx.space_group_info:
  - new reflection_intensity_equivalent_groups() method

cctbx.sgtbx:
  - new sgtbx.tensor_rank_2.constraints.independent_curvatures() method

cctbx.adptbx:
  - new debye_waller_factor_u_star_gradient_coefficients
  - new debye_waller_factor_u_star_gradients
  - new debye_waller_factor_u_star_curvature_coefficients
  - new debye_waller_factor_u_star_curvatures

new cctbx example: adp_symmetry_constraints.py

cctbx.array_family.flex.linear_regression:
  - new support for weights, based on a Python prototype by Nigel Moriarty

obsolete cctbx.mintbx removed

scitbx.python_utils.easy_pickle -> libtbx.easy_pickle

scitbx.array_family:
  - new flex.double.add_selected(), flex.vec3_double.add_selected()
  - new flex.double.matrix_transpose()
  - new flex.double.matrix_upper_diagonal()
  - new flex.double.angle()

boost_adaptbx:
  - new boost.optional extension provides boost::optional<> conversions

Latest CCP4 I/O CVS (2005_08_10_0129)
Latest Clipper (2005_07_15)
Latest PyCifRW (PyCifRW-2.0.tar.gz)
Latest Boost CVS (2005_08_10_0145)
Latest SCons CVS (2005_08_10_0140)