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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8FS4 | 29413 | 2024-03-18 | 2023-01-09 | 2.94 | 3.30 | 3.09 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 18.51 | 0.00 | 1.835 | 9.66 | 2.69 | 3.6 | 96.4 | 0.0 | -0.22 | 0.66 | 0.78 | 1.97 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 18.80 | 0.00 | 1.927 | 11.31 | 2.91 | 3.4 | 96.6 | 0.0 | 0.30 | 0.49 | 0.64 | 0.79 | 2.15 | 21291 | 2539 | 16 | 42 | 9 | 0 | 0 | logfile |
✔ | 8FS4 | 29413 | 2023-08-16 | 2023-01-09 | 2.94 | 3.30 | 3.09 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 18.37 | 0.00 | 1.835 | 9.66 | 2.69 | 3.6 | 96.4 | 0.0 | -0.22 | 0.66 | 0.78 | 1.97 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 18.96 | 0.00 | 1.885 | 11.45 | 3.78 | 3.6 | 96.4 | 0.0 | 0.30 | 0.50 | 0.62 | 0.78 | 2.23 | 21291 | 2539 | 16 | 42 | 9 | 0 | 0 | logfile |
✔ | 8HFX | 34727 | 2024-03-24 | 2022-11-13 | 2.98 | 3.33 | 3.29 | 3.3 | 0.005 | 0.74 | 2.0 | 0.05 | 16.11 | 0.01 | 2.143 | 6.12 | 0.78 | 3.6 | 96.4 | 0.0 | -0.61 | 0.75 | 0.85 | 2.85 | 3.2 | 0.004 | 0.60 | 0.0 | 0.05 | 14.47 | 0.00 | 2.063 | 6.70 | 1.75 | 3.6 | 96.4 | 0.0 | 0.04 | 1.00 | 0.74 | 0.87 | 2.71 | 30807 | 3776 | 26 | 0 | 69 | 0 | 0 | logfile |
✔ | 8DMX | 27548 | 2024-02-15 | 2022-07-08 | 3.37 | 3.66 | 3.43 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.99 | 0.00 | 2.105 | 6.01 | 0.00 | 2.3 | 97.7 | 0.0 | 0.17 | 0.55 | 0.79 | 2.06 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.94 | 0.00 | 2.005 | 3.73 | 1.83 | 2.5 | 97.5 | 0.0 | -0.42 | 0.49 | 0.70 | 0.91 | 2.41 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7V4D | 31708 | 2023-10-02 | 2021-08-12 | 3.5 | 3.38 | — | 4.0 | 0.003 | 0.54 | 0.0 | 0.05 | 11.89 | 0.00 | 2.234 | 14.44 | 0.00 | 7.1 | 92.9 | 0.0 | -5.68 | 0.41 | 0.80 | 4.67 | 4.1 | 0.003 | 0.67 | 0.0 | 0.05 | 13.01 | 0.00 | 2.208 | 8.66 | 0.00 | 9.2 | 90.8 | 0.0 | -3.61 | 1.19 | 0.42 | 0.80 | 4.19 | 2376 | 348 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FS4 | 29413 | 2023-07-10 | 2023-01-09 | 2.94 | 3.30 | 3.09 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 18.37 | 0.00 | 1.835 | 9.66 | 2.69 | 3.6 | 96.4 | 0.0 | -0.22 | 0.66 | 0.78 | 1.97 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 18.96 | 0.00 | 1.885 | 11.45 | 3.78 | 3.6 | 96.4 | 0.0 | 0.30 | 0.50 | 0.62 | 0.78 | 2.23 | 21291 | 2539 | 16 | 42 | 9 | 0 | 0 | logfile |
✔ | 7V4D | 31708 | 2023-11-13 | 2021-08-12 | 3.5 | 3.38 | — | 4.0 | 0.003 | 0.54 | 0.0 | 0.05 | 11.89 | 0.00 | 2.234 | 14.44 | 0.00 | 7.1 | 92.9 | 0.0 | -5.68 | 0.41 | 0.80 | 4.67 | 4.1 | 0.003 | 0.67 | 0.0 | 0.05 | 13.01 | 0.00 | 2.208 | 8.66 | 0.00 | 9.2 | 90.8 | 0.0 | -3.61 | 1.19 | 0.42 | 0.80 | 4.19 | 2376 | 348 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FS4 | 29413 | 2024-02-18 | 2023-01-09 | 2.94 | 3.30 | 3.09 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 18.51 | 0.00 | 1.835 | 9.66 | 2.69 | 3.6 | 96.4 | 0.0 | -0.22 | 0.66 | 0.78 | 1.97 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 18.80 | 0.00 | 1.927 | 11.31 | 2.91 | 3.4 | 96.6 | 0.0 | 0.30 | 0.49 | 0.64 | 0.79 | 2.15 | 21291 | 2539 | 16 | 42 | 9 | 0 | 0 | logfile |
✔ | 8DMX | 27548 | 2023-11-15 | 2022-07-08 | 3.37 | 3.66 | 3.43 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.99 | 0.00 | 2.105 | 6.01 | 0.00 | 2.3 | 97.7 | 0.0 | 0.17 | 0.55 | 0.79 | 2.06 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.82 | 0.00 | 2.014 | 3.56 | 0.16 | 2.2 | 97.8 | 0.0 | -0.45 | 0.50 | 0.69 | 0.91 | 2.30 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8DMX | 27548 | 2023-12-09 | 2022-07-08 | 3.37 | 3.66 | 3.43 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.99 | 0.00 | 2.105 | 6.01 | 0.00 | 2.3 | 97.7 | 0.0 | 0.17 | 0.55 | 0.79 | 2.06 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.82 | 0.00 | 2.014 | 3.56 | 0.16 | 2.2 | 97.8 | 0.0 | -0.45 | 0.50 | 0.69 | 0.91 | 2.30 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8DMX | 27548 | 2024-03-15 | 2022-07-08 | 3.37 | 3.66 | 3.43 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.99 | 0.00 | 2.105 | 6.01 | 0.00 | 2.3 | 97.7 | 0.0 | 0.17 | 0.55 | 0.79 | 2.06 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.94 | 0.00 | 2.005 | 3.73 | 1.83 | 2.5 | 97.5 | 0.0 | -0.42 | 0.49 | 0.70 | 0.91 | 2.41 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7V4D | 31708 | 2023-12-07 | 2021-08-12 | 3.5 | 3.38 | — | 4.0 | 0.003 | 0.54 | 0.0 | 0.05 | 11.89 | 0.00 | 2.234 | 14.44 | 0.00 | 7.1 | 92.9 | 0.0 | -5.68 | 0.41 | 0.80 | 4.67 | 4.1 | 0.003 | 0.67 | 0.0 | 0.05 | 13.01 | 0.00 | 2.208 | 8.66 | 0.00 | 9.2 | 90.8 | 0.0 | -3.61 | 1.19 | 0.42 | 0.80 | 4.19 | 2376 | 348 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DMX | 27548 | 2023-08-12 | 2022-07-08 | 3.37 | 3.66 | 3.43 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.99 | 0.00 | 2.105 | 6.01 | 0.00 | 2.3 | 97.7 | 0.0 | 0.17 | 0.55 | 0.79 | 2.06 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.82 | 0.00 | 2.014 | 3.56 | 0.16 | 2.2 | 97.8 | 0.0 | -0.45 | 0.50 | 0.69 | 0.91 | 2.30 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7RL4 | 24514 | 2023-09-27 | 2021-07-23 | 2.86 | 2.50 | — | 3.1 | 0.015 | 1.16 | 0.0 | 0.07 | 16.04 | 0.01 | 2.535 | 12.04 | 0.00 | 12.5 | 87.5 | 0.0 | -4.62 | 0.39 | 0.82 | 4.55 | 3.1 | 0.009 | 0.89 | 0.0 | 0.05 | 16.66 | 0.00 | 2.208 | 17.42 | 3.00 | 7.0 | 93.0 | 0.0 | -4.67 | 1.13 | 0.39 | 0.84 | 4.85 | 4620 | 680 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DMX | 27548 | 2023-09-30 | 2022-07-08 | 3.37 | 3.66 | 3.43 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.99 | 0.00 | 2.105 | 6.01 | 0.00 | 2.3 | 97.7 | 0.0 | 0.17 | 0.55 | 0.79 | 2.06 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.82 | 0.00 | 2.014 | 3.56 | 0.16 | 2.2 | 97.8 | 0.0 | -0.45 | 0.50 | 0.69 | 0.91 | 2.30 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8DMX | 27548 | 2024-01-19 | 2022-07-08 | 3.37 | 3.66 | 3.43 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.99 | 0.00 | 2.105 | 6.01 | 0.00 | 2.3 | 97.7 | 0.0 | 0.17 | 0.55 | 0.79 | 2.06 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.94 | 0.00 | 2.005 | 3.73 | 1.83 | 2.5 | 97.5 | 0.0 | -0.42 | 0.49 | 0.70 | 0.91 | 2.41 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8DMX | 27548 | 2023-10-05 | 2022-07-08 | 3.37 | 3.66 | 3.43 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.99 | 0.00 | 2.105 | 6.01 | 0.00 | 2.3 | 97.7 | 0.0 | 0.17 | 0.55 | 0.79 | 2.06 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.82 | 0.00 | 2.014 | 3.56 | 0.16 | 2.2 | 97.8 | 0.0 | -0.45 | 0.50 | 0.69 | 0.91 | 2.30 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7RoC | 24591 | 2023-12-13 | 2021-07-30 | 3.7 | 3.89 | — | 3.7 | 0.003 | 0.68 | 0.0 | 0.05 | 11.37 | 0.01 | 2.563 | 18.31 | 0.00 | 5.4 | 94.6 | 0.0 | 3.01 | 0.69 | 0.84 | 1.59 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 14.35 | 0.01 | 2.157 | 9.23 | 0.53 | 5.0 | 95.0 | 0.0 | 3.21 | 1.21 | 0.69 | 0.85 | 1.39 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RoC | 24591 | 2023-11-19 | 2021-07-30 | 3.7 | 3.89 | — | 3.7 | 0.003 | 0.68 | 0.0 | 0.05 | 11.37 | 0.01 | 2.563 | 18.31 | 0.00 | 5.4 | 94.6 | 0.0 | 3.01 | 0.69 | 0.84 | 1.59 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 14.35 | 0.01 | 2.157 | 9.23 | 0.53 | 5.0 | 95.0 | 0.0 | 3.21 | 1.21 | 0.69 | 0.85 | 1.39 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FS4 | 29413 | 2023-10-10 | 2023-01-09 | 2.94 | 3.30 | 3.09 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 18.37 | 0.00 | 1.835 | 9.66 | 2.69 | 3.6 | 96.4 | 0.0 | -0.22 | 0.66 | 0.78 | 1.97 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 18.84 | 0.00 | 1.954 | 10.53 | 3.65 | 3.1 | 96.8 | 0.0 | 0.68 | 0.49 | 0.63 | 0.78 | 2.00 | 21291 | 2539 | 16 | 42 | 9 | 0 | 0 | logfile |