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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8D8o | 27253 | 2024-03-15 | 2022-06-08 | 3.35 | 3.59 | 3.32 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.92 | 0.01 | 2.133 | 7.67 | 0.16 | 5.9 | 94.1 | 0.0 | -0.78 | 0.73 | 0.82 | 2.46 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 16.34 | 0.00 | 2.217 | 7.71 | 3.41 | 4.8 | 95.2 | 0.0 | -0.76 | 0.87 | 0.73 | 0.83 | 2.32 | 11819 | 1536 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8D8o | 27253 | 2023-08-12 | 2022-06-08 | 3.35 | 3.59 | 3.32 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.92 | 0.01 | 2.133 | 7.67 | 0.16 | 5.9 | 94.1 | 0.0 | -0.78 | 0.73 | 0.82 | 2.46 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 16.20 | 0.00 | 2.200 | 7.23 | 0.23 | 5.2 | 94.8 | 0.0 | -0.60 | 0.27 | 0.73 | 0.82 | 2.29 | 11819 | 1536 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6ZXN | 11526 | 2023-10-03 | 2020-07-30 | 2.93 | 3.41 | — | 3.3 | 0.004 | 0.56 | 0.0 | 0.05 | 12.73 | 0.00 | 1.940 | 7.08 | 0.10 | 4.5 | 95.5 | 0.0 | -0.46 | 0.54 | 0.73 | 2.84 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 14.62 | 0.00 | 1.903 | 8.60 | 0.78 | 4.8 | 95.2 | 0.0 | -0.32 | 1.11 | 0.51 | 0.72 | 2.85 | 55098 | 3522 | 21 | 0 | 63 | 0 | 26763 | logfile |
✔ | 8D8o | 27253 | 2024-02-15 | 2022-06-08 | 3.35 | 3.59 | 3.32 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.92 | 0.01 | 2.133 | 7.67 | 0.16 | 5.9 | 94.1 | 0.0 | -0.78 | 0.73 | 0.82 | 2.46 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 16.34 | 0.00 | 2.217 | 7.71 | 3.41 | 4.8 | 95.2 | 0.0 | -0.76 | 0.87 | 0.73 | 0.83 | 2.32 | 11819 | 1536 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8D8o | 27253 | 2023-06-17 | 2022-06-08 | 3.35 | 3.59 | 3.32 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.92 | 0.01 | 2.133 | 7.67 | 0.16 | 5.9 | 94.1 | 0.0 | -0.78 | 0.73 | 0.82 | 2.46 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 16.20 | 0.00 | 2.200 | 7.23 | 0.23 | 5.2 | 94.8 | 0.0 | -0.60 | 0.27 | 0.73 | 0.82 | 2.29 | 11819 | 1536 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8D8o | 27253 | 2023-07-06 | 2022-06-08 | 3.35 | 3.59 | 3.32 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.92 | 0.01 | 2.133 | 7.67 | 0.16 | 5.9 | 94.1 | 0.0 | -0.78 | 0.73 | 0.82 | 2.46 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 16.20 | 0.00 | 2.200 | 7.23 | 0.23 | 5.2 | 94.8 | 0.0 | -0.60 | 0.27 | 0.73 | 0.82 | 2.29 | 11819 | 1536 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6ZXN | 11526 | 2023-11-14 | 2020-07-30 | 2.93 | 3.41 | — | 3.3 | 0.004 | 0.56 | 0.0 | 0.05 | 12.73 | 0.00 | 1.940 | 7.08 | 0.10 | 4.5 | 95.5 | 0.0 | -0.46 | 0.54 | 0.73 | 2.84 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 14.62 | 0.00 | 1.903 | 8.60 | 0.78 | 4.8 | 95.2 | 0.0 | -0.32 | 1.11 | 0.51 | 0.72 | 2.85 | 55098 | 3522 | 21 | 0 | 63 | 0 | 26763 | logfile |
✔ | 6JX7 | 9891 | 2023-12-15 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.010 | 1.26 | 3.0 | 0.10 | 14.10 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | 3.7 | 0.003 | 0.72 | 0.0 | 0.05 | 15.22 | 0.00 | 2.094 | 10.36 | 0.52 | 11.2 | 88.8 | 0.0 | -2.32 | 0.65 | 0.64 | 0.83 | 1.90 | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✔ | 8D8o | 27253 | 2024-01-19 | 2022-06-08 | 3.35 | 3.59 | 3.32 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.92 | 0.01 | 2.133 | 7.67 | 0.16 | 5.9 | 94.1 | 0.0 | -0.78 | 0.73 | 0.82 | 2.46 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 16.34 | 0.00 | 2.217 | 7.71 | 3.41 | 4.8 | 95.2 | 0.0 | -0.76 | 0.87 | 0.73 | 0.83 | 2.32 | 11819 | 1536 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZDG | 14645 | 2024-02-14 | 2022-03-29 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9007 | 1157 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZDG | 14645 | 2024-01-18 | 2022-03-29 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9007 | 1157 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6ZXN | 11526 | 2023-12-08 | 2020-07-30 | 2.93 | 3.41 | — | 3.3 | 0.004 | 0.56 | 0.0 | 0.05 | 12.86 | 0.00 | 1.940 | 7.08 | 0.10 | 4.5 | 95.5 | 0.0 | -0.46 | 0.54 | 0.73 | 2.84 | 3.3 | 0.004 | 0.54 | 0.0 | 0.04 | 13.98 | 0.00 | 1.907 | 8.52 | 0.85 | 4.9 | 95.1 | 0.0 | -0.31 | 1.11 | 0.51 | 0.73 | 2.92 | 55098 | 3522 | 21 | 0 | 63 | 0 | 26763 | logfile |
✔ | 6JX7 | 9891 | 2024-02-21 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.010 | 1.26 | 3.0 | 0.10 | 19.25 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | 3.7 | 0.004 | 0.74 | 0.0 | 0.05 | 14.84 | 0.00 | 2.029 | 10.42 | 3.27 | 12.2 | 87.8 | 0.0 | -2.30 | 1.07 | 0.64 | 0.83 | 1.83 | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✔ | 6JX7 | 9891 | 2024-03-22 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.010 | 1.26 | 3.0 | 0.10 | 19.25 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | 3.7 | 0.004 | 0.74 | 0.0 | 0.05 | 14.84 | 0.00 | 2.029 | 10.42 | 3.27 | 12.2 | 87.8 | 0.0 | -2.30 | 1.07 | 0.64 | 0.83 | 1.83 | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✘ | 6JX7 | 9891 | 2023-06-25 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.010 | 1.26 | 3.0 | 0.10 | 14.57 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✘ | 6JX7 | 9891 | 2023-07-15 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.010 | 1.26 | 3.0 | 0.10 | 14.57 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✘ | 6JX7 | 9891 | 2023-08-21 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.010 | 1.26 | 3.0 | 0.10 | 14.57 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✘ | 6JX7 | 9891 | 2023-10-16 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.010 | 1.26 | 3.0 | 0.10 | 14.57 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✘ | 6JX7 | 9891 | 2023-11-21 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.010 | 1.26 | 3.0 | 0.10 | 14.57 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✘ | 7ZDG | 14645 | 2024-03-14 | 2022-03-29 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9007 | 1157 | 2 | 0 | 1 | 0 | 0 | logfile |