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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6XF6 | 22162 | 2023-11-18 | 2020-06-15 | 4.0 | 4.88 | 4.07 | 4.1 | 0.005 | 0.80 | 0.0 | 0.06 | 11.50 | 0.01 | 2.249 | 3.71 | 0.21 | 2.6 | 97.4 | 0.0 | 0.03 | 0.85 | 0.78 | — | 4.2 | 0.002 | 0.59 | 0.0 | 0.04 | 13.01 | 0.00 | 2.172 | 9.92 | 0.04 | 2.6 | 97.4 | 0.0 | 0.56 | 1.23 | 0.87 | 0.83 | — | 22938 | 2928 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 7Wo9 | 32643 | 2024-01-19 | 2022-01-20 | 2.81 | 3.01 | — | 3.0 | 0.002 | 0.50 | 0.0 | 0.04 | 13.97 | 0.00 | 2.227 | 5.86 | 0.00 | 4.2 | 95.8 | 0.0 | 1.49 | 0.70 | 0.78 | 2.04 | 3.0 | 0.002 | 0.50 | 0.0 | 0.04 | 16.17 | 0.00 | 2.216 | 5.82 | 1.01 | 4.7 | 95.3 | 0.0 | 1.94 | 0.74 | 0.71 | 0.80 | 1.84 | 12743 | 1581 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XF6 | 22162 | 2023-06-21 | 2020-06-15 | 4.0 | 4.88 | 4.07 | 4.1 | 0.005 | 0.80 | 0.0 | 0.06 | 11.50 | 0.01 | 2.249 | 3.71 | 0.21 | 2.6 | 97.4 | 0.0 | 0.03 | 0.85 | 0.78 | — | 4.2 | 0.002 | 0.59 | 0.0 | 0.04 | 13.01 | 0.00 | 2.172 | 9.92 | 0.04 | 2.6 | 97.4 | 0.0 | 0.56 | 1.23 | 0.87 | 0.83 | — | 22938 | 2928 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 6XF6 | 22162 | 2023-10-11 | 2020-06-15 | 4.0 | 4.88 | 4.07 | 4.1 | 0.005 | 0.80 | 0.0 | 0.06 | 11.50 | 0.01 | 2.249 | 3.71 | 0.21 | 2.6 | 97.4 | 0.0 | 0.03 | 0.85 | 0.78 | — | 4.2 | 0.002 | 0.59 | 0.0 | 0.04 | 13.01 | 0.00 | 2.172 | 9.92 | 0.04 | 2.6 | 97.4 | 0.0 | 0.56 | 1.23 | 0.87 | 0.83 | — | 22938 | 2928 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 6XF6 | 22162 | 2023-12-12 | 2020-06-15 | 4.0 | 4.88 | 4.07 | 4.1 | 0.005 | 0.80 | 0.0 | 0.06 | 11.19 | 0.01 | 2.249 | 3.71 | 0.21 | 2.6 | 97.4 | 0.0 | 0.03 | 0.85 | 0.78 | — | 4.2 | 0.002 | 0.57 | 0.0 | 0.04 | 12.18 | 0.00 | 2.074 | 9.96 | 0.04 | 3.2 | 96.8 | 0.0 | 0.57 | 1.23 | 0.87 | 0.83 | — | 22938 | 2928 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 6LB0 | 0866 | 2024-03-25 | 2019-11-13 | 3.6 | 3.79 | — | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 13.62 | 0.01 | 0.919 | 7.46 | 0.00 | 6.5 | 93.5 | 0.0 | -3.90 | 0.74 | 0.89 | 4.20 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 14.50 | 0.00 | 2.016 | 7.35 | 3.76 | 4.6 | 95.4 | 0.0 | -2.14 | 0.52 | 0.74 | 0.89 | 3.90 | 148140 | 19440 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QiY | 14003 | 2023-07-18 | 2021-12-16 | 2.58 | 2.55 | 2.47 | 2.5 | 0.008 | 0.74 | 0.0 | 0.04 | 13.02 | 0.02 | 1.714 | 1.92 | 0.00 | 1.5 | 98.5 | 0.0 | 0.57 | 0.80 | 0.88 | 4.88 | 2.5 | 0.002 | 0.67 | 0.0 | 0.04 | 15.03 | 0.01 | 1.759 | 4.34 | 0.87 | 1.8 | 98.2 | 0.0 | 1.58 | 0.59 | 0.80 | 0.90 | 4.50 | 43805 | 1730 | 31 | 491 | 41 | 225 | 19242 | logfile |
✔ | 7TFA | 25867 | 2024-03-24 | 2022-01-06 | 2.07 | 2.20 | — | 2.2 | 0.003 | 0.57 | 0.0 | 0.04 | 17.35 | 0.00 | 2.014 | 5.94 | 2.16 | 3.6 | 96.4 | 0.0 | 0.31 | 0.47 | 0.65 | 4.55 | 2.2 | 0.002 | 0.49 | 0.0 | 0.04 | 16.89 | 0.00 | 1.897 | 19.57 | 3.03 | 3.8 | 96.2 | 0.0 | 0.80 | 0.39 | 0.70 | 0.82 | 5.14 | 42636 | 5424 | 36 | 0 | 24 | 0 | 120 | logfile |
✔ | 6XF6 | 22162 | 2023-07-11 | 2020-06-15 | 4.0 | 4.88 | 4.07 | 4.1 | 0.005 | 0.80 | 0.0 | 0.06 | 11.50 | 0.01 | 2.249 | 3.71 | 0.21 | 2.6 | 97.4 | 0.0 | 0.03 | 0.85 | 0.78 | — | 4.2 | 0.002 | 0.59 | 0.0 | 0.04 | 13.01 | 0.00 | 2.172 | 9.92 | 0.04 | 2.6 | 97.4 | 0.0 | 0.56 | 1.23 | 0.87 | 0.83 | — | 22938 | 2928 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 6XF6 | 22162 | 2023-08-17 | 2020-06-15 | 4.0 | 4.88 | 4.07 | 4.1 | 0.005 | 0.80 | 0.0 | 0.06 | 11.50 | 0.01 | 2.249 | 3.71 | 0.21 | 2.6 | 97.4 | 0.0 | 0.03 | 0.85 | 0.78 | — | 4.2 | 0.002 | 0.59 | 0.0 | 0.04 | 13.01 | 0.00 | 2.172 | 9.92 | 0.04 | 2.6 | 97.4 | 0.0 | 0.56 | 1.23 | 0.87 | 0.83 | — | 22938 | 2928 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 6YJ5 | 10816 | 2024-02-13 | 2020-04-02 | 3.5 | 2.92 | 3.56 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 13.19 | 0.01 | 2.183 | 4.22 | 0.00 | 12.5 | 87.5 | 0.0 | -5.13 | 0.42 | 0.62 | 3.01 | 3.3 | 0.002 | 0.64 | 0.0 | 0.05 | 14.95 | 0.00 | 2.282 | 7.66 | 0.00 | 6.9 | 93.1 | 0.0 | -1.68 | 0.75 | 0.50 | 0.71 | 1.79 | 2061 | 306 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YJ5 | 10816 | 2024-01-17 | 2020-04-02 | 3.5 | 2.92 | 3.56 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 13.19 | 0.01 | 2.183 | 4.22 | 0.00 | 12.5 | 87.5 | 0.0 | -5.13 | 0.42 | 0.62 | 3.01 | 3.3 | 0.002 | 0.64 | 0.0 | 0.05 | 14.95 | 0.00 | 2.282 | 7.66 | 0.00 | 6.9 | 93.1 | 0.0 | -1.68 | 0.75 | 0.50 | 0.71 | 1.79 | 2061 | 306 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YJ5 | 10816 | 2024-03-10 | 2020-04-02 | 3.5 | 2.92 | 3.56 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 13.19 | 0.01 | 2.183 | 4.22 | 0.00 | 12.5 | 87.5 | 0.0 | -5.13 | 0.42 | 0.62 | 3.01 | 3.3 | 0.002 | 0.64 | 0.0 | 0.05 | 14.95 | 0.00 | 2.282 | 7.66 | 0.00 | 6.9 | 93.1 | 0.0 | -1.68 | 0.75 | 0.50 | 0.71 | 1.79 | 2061 | 306 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LB0 | 0866 | 2024-02-27 | 2019-11-13 | 3.6 | 3.79 | — | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 13.62 | 0.01 | 0.919 | 7.46 | 0.00 | 6.5 | 93.5 | 0.0 | -3.90 | 0.74 | 0.89 | 4.20 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 14.50 | 0.00 | 2.016 | 7.35 | 3.76 | 4.6 | 95.4 | 0.0 | -2.14 | 0.52 | 0.74 | 0.89 | 3.90 | 148140 | 19440 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PXF | 13701 | 2024-02-20 | 2021-10-08 | 2.68 | 2.75 | 2.73 | 2.9 | 0.002 | 0.45 | 0.0 | 0.04 | 12.99 | 0.00 | 2.188 | 5.55 | 0.65 | 2.1 | 97.9 | 0.0 | -0.25 | 0.66 | 0.85 | 3.21 | 2.9 | 0.002 | 0.52 | 0.0 | 0.04 | 15.68 | 0.00 | 2.138 | 6.73 | 1.91 | 2.0 | 98.0 | 0.0 | 0.68 | 0.49 | 0.66 | 0.87 | 3.56 | 28099 | 3540 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 7PXF | 13701 | 2024-03-20 | 2021-10-08 | 2.68 | 2.75 | 2.73 | 2.9 | 0.002 | 0.45 | 0.0 | 0.04 | 12.99 | 0.00 | 2.188 | 5.55 | 0.65 | 2.1 | 97.9 | 0.0 | -0.25 | 0.66 | 0.85 | 3.21 | 2.9 | 0.002 | 0.52 | 0.0 | 0.04 | 15.68 | 0.00 | 2.138 | 6.73 | 1.91 | 2.0 | 98.0 | 0.0 | 0.68 | 0.49 | 0.66 | 0.87 | 3.56 | 28099 | 3540 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 7QiY | 14003 | 2023-08-25 | 2021-12-16 | 2.58 | 2.55 | 2.47 | 2.5 | 0.008 | 0.74 | 0.0 | 0.04 | 13.02 | 0.02 | 1.714 | 1.92 | 0.00 | 1.5 | 98.5 | 0.0 | 0.57 | 0.80 | 0.88 | 4.88 | 2.5 | 0.002 | 0.67 | 0.0 | 0.04 | 15.03 | 0.01 | 1.759 | 4.34 | 0.87 | 1.8 | 98.2 | 0.0 | 1.58 | 0.59 | 0.80 | 0.90 | 4.50 | 43805 | 1730 | 31 | 491 | 41 | 225 | 19242 | logfile |
✔ | 7TFA | 25867 | 2024-02-24 | 2022-01-06 | 2.07 | 2.20 | — | 2.2 | 0.003 | 0.57 | 0.0 | 0.04 | 17.35 | 0.00 | 2.014 | 5.94 | 2.16 | 3.6 | 96.4 | 0.0 | 0.31 | 0.47 | 0.65 | 4.55 | 2.2 | 0.002 | 0.49 | 0.0 | 0.04 | 16.89 | 0.00 | 1.897 | 19.57 | 3.03 | 3.8 | 96.2 | 0.0 | 0.80 | 0.39 | 0.70 | 0.82 | 5.14 | 42636 | 5424 | 36 | 0 | 24 | 0 | 120 | logfile |
✔ | 8B0J | 15785 | 2023-10-14 | 2022-09-07 | 3.99 | 4.45 | 4.02 | 4.1 | 0.009 | 1.30 | 0.0 | 0.08 | 19.83 | 0.01 | 1.945 | 11.42 | 0.00 | 9.7 | 90.3 | 0.0 | -2.43 | 0.73 | 0.68 | 1.71 | 4.1 | 0.002 | 0.62 | 0.0 | 0.04 | 19.62 | 0.00 | 1.972 | 14.33 | 0.77 | 4.5 | 95.5 | 0.0 | 0.21 | 1.44 | 0.75 | 0.74 | 1.55 | 28636 | 1931 | 7 | 160 | 0 | 0 | 12434 | logfile |
✔ | 6LB0 | 0866 | 2023-07-24 | 2019-11-13 | 3.6 | 3.79 | — | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 13.62 | 0.01 | 0.919 | 7.46 | 0.00 | 6.5 | 93.5 | 0.0 | -3.90 | 0.74 | 0.89 | 4.20 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 14.24 | 0.00 | 2.237 | 7.40 | 0.39 | 4.7 | 95.3 | 0.0 | -2.02 | 0.52 | 0.74 | 0.89 | 3.68 | 148140 | 19440 | 60 | 0 | 0 | 0 | 0 | logfile |