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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DXR | 27774 | 2023-07-05 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2023-06-16 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2024-02-14 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2023-09-30 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2023-08-11 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2024-01-19 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2023-10-05 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2023-12-09 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2023-11-15 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2024-03-15 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TAU | 41142 | 2023-12-08 | 2023-06-27 | 3.5 | 3.03 | 3.36 | 1.8 | 0.006 | 0.79 | 0.0 | 0.00 | 7.52 | 0.01 | 2.188 | 4.55 | 0.00 | 2.1 | 97.9 | 0.0 | -2.34 | 0.73 | 0.66 | — | 2.4 | 0.002 | 0.61 | 0.0 | 0.00 | 4.02 | 0.00 | 2.062 | 4.93 | 0.00 | 8.3 | 91.7 | 0.0 | -0.61 | 0.66 | 0.77 | 0.73 | — | 54106 | 9002 | 25 | 0 | 4 | 0 | 18087 | logfile |
✔ | 8FKJ | 29250 | 2024-02-19 | 2022-12-21 | 4.2 | 4.36 | 4.26 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 5.09 | 0.00 | 2.167 | 6.77 | 0.00 | 9.9 | 89.9 | 0.1 | -0.50 | 0.66 | 0.65 | — | 4.0 | 0.002 | 0.52 | 0.0 | 0.04 | 4.07 | 0.00 | 2.191 | 3.93 | 0.00 | 8.9 | 91.0 | 0.1 | 0.18 | 0.40 | 0.66 | 0.67 | — | 25001 | 5088 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FKJ | 29250 | 2024-03-19 | 2022-12-21 | 4.2 | 4.36 | 4.26 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 5.09 | 0.00 | 2.167 | 6.77 | 0.00 | 9.9 | 89.9 | 0.1 | -0.50 | 0.66 | 0.65 | — | 4.0 | 0.002 | 0.52 | 0.0 | 0.04 | 4.07 | 0.00 | 2.191 | 3.93 | 0.00 | 8.9 | 91.0 | 0.1 | 0.18 | 0.40 | 0.66 | 0.67 | — | 25001 | 5088 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U68 | 20662 | 2023-06-16 | 2019-08-29 | 4.5 | 4.54 | — | 4.5 | 0.006 | 0.90 | 0.0 | 0.06 | 4.27 | 0.00 | 2.419 | 0.52 | 0.00 | 2.6 | 97.3 | 0.1 | -3.82 | 0.71 | 0.71 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.05 | 4.13 | 0.00 | 2.325 | 3.21 | 0.00 | 6.1 | 93.9 | 0.0 | -0.04 | 1.78 | 0.77 | 0.81 | — | 10489 | 2133 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U68 | 20662 | 2023-07-05 | 2019-08-29 | 4.5 | 4.54 | — | 4.5 | 0.006 | 0.90 | 0.0 | 0.06 | 4.27 | 0.00 | 2.419 | 0.52 | 0.00 | 2.6 | 97.3 | 0.1 | -3.82 | 0.71 | 0.71 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.05 | 4.13 | 0.00 | 2.325 | 3.21 | 0.00 | 6.1 | 93.9 | 0.0 | -0.04 | 1.78 | 0.77 | 0.81 | — | 10489 | 2133 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U68 | 20662 | 2024-03-15 | 2019-08-29 | 4.5 | 4.54 | — | 4.5 | 0.006 | 0.90 | 0.0 | 0.06 | 4.27 | 0.00 | 2.419 | 0.52 | 0.00 | 2.6 | 97.3 | 0.1 | -3.82 | 0.71 | 0.71 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.05 | 4.13 | 0.00 | 2.325 | 3.21 | 0.00 | 6.1 | 93.9 | 0.0 | -0.04 | 1.78 | 0.77 | 0.81 | — | 10489 | 2133 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U68 | 20662 | 2024-02-14 | 2019-08-29 | 4.5 | 4.54 | — | 4.5 | 0.006 | 0.90 | 0.0 | 0.06 | 4.27 | 0.00 | 2.419 | 0.52 | 0.00 | 2.6 | 97.3 | 0.1 | -3.82 | 0.71 | 0.71 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.05 | 4.13 | 0.00 | 2.325 | 3.21 | 0.00 | 6.1 | 93.9 | 0.0 | -0.04 | 1.78 | 0.77 | 0.81 | — | 10489 | 2133 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U68 | 20662 | 2024-01-19 | 2019-08-29 | 4.5 | 4.54 | — | 4.5 | 0.006 | 0.90 | 0.0 | 0.06 | 4.27 | 0.00 | 2.419 | 0.52 | 0.00 | 2.6 | 97.3 | 0.1 | -3.82 | 0.71 | 0.71 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.05 | 4.13 | 0.00 | 2.325 | 3.21 | 0.00 | 6.1 | 93.9 | 0.0 | -0.04 | 1.78 | 0.77 | 0.81 | — | 10489 | 2133 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U68 | 20662 | 2023-09-30 | 2019-08-29 | 4.5 | 4.54 | — | 4.5 | 0.006 | 0.90 | 0.0 | 0.06 | 4.27 | 0.00 | 2.419 | 0.52 | 0.00 | 2.6 | 97.3 | 0.1 | -3.82 | 0.71 | 0.71 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.05 | 4.13 | 0.00 | 2.325 | 3.21 | 0.00 | 6.1 | 93.9 | 0.0 | -0.04 | 1.78 | 0.77 | 0.81 | — | 10489 | 2133 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U68 | 20662 | 2023-08-11 | 2019-08-29 | 4.5 | 4.54 | — | 4.5 | 0.006 | 0.90 | 0.0 | 0.06 | 4.27 | 0.00 | 2.419 | 0.52 | 0.00 | 2.6 | 97.3 | 0.1 | -3.82 | 0.71 | 0.71 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.05 | 4.13 | 0.00 | 2.325 | 3.21 | 0.00 | 6.1 | 93.9 | 0.0 | -0.04 | 1.78 | 0.77 | 0.81 | — | 10489 | 2133 | 8 | 0 | 0 | 0 | 0 | logfile |