Table showing results for February 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WF7	32461	2022-02-01	2021-12-26	3.4	3.19	—	3.2	0.004	0.83	0.0	0.05	13.24	0.00	2.288	2.88	0.00	4.4	95.6	0.0	-1.14	0.55	0.64	1.44	3.3	0.004	0.73	0.0	0.04	15.47	0.00	2.173	11.04	0.56	6.0	94.0	0.0	-0.21	0.61	0.56	0.62	1.68	8136	1034	6	0	1	0	0	logfile
✔	7T9L	25761	2022-02-01	2021-12-19	2.66	3.24	—	3.1	0.006	0.94	0.0	0.06	14.17	0.01	2.276	3.89	0.14	2.8	97.2	0.0	-1.53	0.78	0.84	3.31	3.1	0.004	0.74	0.0	0.04	16.78	0.00	2.162	9.50	1.71	2.8	97.2	0.0	1.27	2.13	0.77	0.85	3.08	6567	796	4	0	7	0	0	logfile
✔	7T9K	25760	2022-02-05	2021-12-19	2.45	3.07	—	2.6	0.004	0.84	0.0	0.06	13.51	0.01	2.262	3.83	0.03	2.1	97.8	0.0	-0.06	0.79	0.79	2.69	2.7	0.007	0.74	1.0	0.05	15.65	0.00	1.862	10.94	1.33	2.2	97.8	0.0	0.71	2.12	0.78	0.79	2.57	33398	4087	28	0	70	0	0	logfile
✔	7T9J	25759	2022-02-03	2021-12-19	2.79	3.38	—	3.2	0.005	0.82	0.0	0.06	12.94	0.01	2.225	4.49	0.17	1.7	98.2	0.0	0.20	0.77	0.71	1.43	3.1	0.005	0.70	0.0	0.05	15.24	0.01	2.140	9.92	1.77	2.6	97.4	0.0	0.40	1.12	0.80	0.82	2.51	21960	2703	24	0	58	0	0	logfile
✔	7QiC	13987	2022-02-01	2021-12-14	4.1	4.27	4.00	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	12.96	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.004	0.68	0.0	0.04	12.71	0.01	2.215	13.88	0.00	7.9	92.1	0.0	-0.15	1.38	0.64	0.80	—	4841	639	4	0	1	0	0	logfile
✔	7QiA	13985	2022-02-01	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.6	0.003	0.63	0.0	0.04	14.58	0.00	2.196	11.22	0.20	7.1	92.9	0.0	-0.27	1.33	0.64	0.80	1.15	4843	639	4	0	0	3	0	logfile
✔	7T4X	25691	2022-02-04	2021-12-10	2.8	3.07	2.83	3.1	0.006	0.93	0.0	0.05	12.97	0.01	2.392	0.82	1.52	1.4	98.6	0.0	-0.26	0.66	0.83	3.93	3.1	0.002	0.53	0.0	0.04	14.84	0.00	2.088	5.41	0.51	2.5	97.5	0.0	1.91	0.89	0.66	0.82	3.12	29234	1778	11	0	7	13	14614	logfile
✘	7SZ0	25558	2022-02-03	2021-11-25	3.3	4.16	—	3.5	0.005	0.79	0.0	0.05	14.46	0.00	2.175	6.34	1.73	11.1	88.6	0.3	-4.37	0.87	0.82	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10216	1322	4	0	0	0	0	logfile
✔	7SZ5	25561	2022-02-01	2021-11-25	3.6	4.60	—	3.8	0.007	0.90	0.0	0.06	14.97	0.00	1.947	18.21	2.83	16.8	83.0	0.2	-5.33	0.86	0.75	1.50	3.8	0.002	0.69	0.0	0.04	15.31	0.00	2.191	14.30	0.38	11.2	88.8	0.0	-2.46	1.64	0.91	0.85	0.99	9367	1214	4	0	0	0	0	logfile
✔	7SZ1	25559	2022-02-03	2021-11-25	3.4	4.37	—	3.5	0.005	0.79	0.0	0.05	14.47	0.00	2.092	10.94	1.65	14.5	85.3	0.2	-4.74	0.85	0.75	1.55	3.5	0.003	0.72	0.0	0.04	15.24	0.00	2.104	13.34	0.26	11.0	88.9	0.1	-2.54	0.60	0.89	0.82	1.27	10216	1322	4	0	0	0	0	logfile
✔	7SZ7	25563	2022-02-02	2021-11-25	3.4	4.38	—	3.7	0.005	0.79	0.0	0.05	14.43	0.00	1.707	9.79	1.81	11.0	88.6	0.4	-4.49	0.86	0.78	2.38	3.7	0.003	0.68	0.0	0.04	15.22	0.00	2.224	11.04	0.17	9.3	90.6	0.1	-2.05	0.56	0.92	0.87	2.25	10218	1328	4	0	0	0	0	logfile
✔	7SY1	25513	2022-02-04	2021-11-24	2.83	3.75	—	3.0	0.004	0.79	0.0	0.05	13.17	0.01	2.279	2.98	0.03	2.0	98.0	0.0	-0.15	0.85	0.82	2.41	3.1	0.003	0.57	0.0	0.04	14.55	0.00	2.171	7.94	0.58	1.9	98.1	0.0	0.87	0.67	0.86	0.85	2.55	28585	3517	26	0	64	0	0	logfile
✔	7SY8	25520	2022-02-01	2021-11-24	3.14	3.87	—	3.6	0.005	0.86	0.0	0.06	13.33	0.01	2.302	2.74	0.00	1.4	98.6	0.0	-0.20	0.82	0.85	2.97	3.5	0.003	0.57	0.0	0.04	14.96	0.00	2.223	8.13	0.00	2.5	97.5	0.0	1.83	0.54	0.83	0.87	3.02	6552	797	4	0	7	0	0	logfile
✔	7SXW	25508	2022-02-03	2021-11-24	2.85	3.59	—	2.9	0.004	0.72	0.0	0.05	12.86	0.01	2.290	2.27	0.00	2.8	97.2	0.0	-0.63	0.83	0.80	2.63	3.0	0.004	0.61	0.0	0.04	14.22	0.00	2.172	8.28	1.10	2.3	97.7	0.0	0.30	1.11	0.83	0.82	2.60	25242	3120	24	0	60	0	0	logfile
✔	7SY4	25516	2022-02-01	2021-11-24	3.35	4.12	—	3.8	0.004	0.83	0.0	0.05	13.39	0.01	2.345	2.34	0.00	1.6	98.4	0.0	-0.68	0.83	0.84	3.10	3.8	0.005	0.67	0.0	0.04	15.65	0.00	2.220	8.82	0.00	2.8	97.2	0.0	1.67	0.65	0.84	0.86	2.49	6554	797	4	0	7	0	0	logfile
✔	7SXR	25503	2022-02-03	2021-11-24	3.0	3.85	—	3.2	0.004	0.76	0.0	0.05	12.80	0.01	2.287	3.36	0.00	1.9	98.1	0.0	-0.27	0.87	0.84	2.71	3.2	0.002	0.50	0.0	0.04	13.97	0.00	2.190	6.31	0.40	2.1	97.9	0.0	0.86	0.52	0.87	0.87	2.38	25236	3120	24	0	60	0	0	logfile
✔	7SY2	25514	2022-02-01	2021-11-24	3.11	3.85	—	3.5	0.005	0.83	0.0	0.05	13.42	0.01	2.307	2.03	0.14	1.4	98.6	0.0	-0.46	0.82	0.85	2.53	3.5	0.003	0.53	0.0	0.04	15.27	0.00	2.188	7.81	0.29	2.6	97.4	0.0	1.72	1.15	0.83	0.87	2.47	6554	797	4	0	7	0	0	logfile
✔	7SXU	25506	2022-02-03	2021-11-24	3.0	3.77	—	3.3	0.004	0.73	0.0	0.05	12.86	0.01	2.284	2.37	0.00	2.8	97.2	0.0	-0.63	0.82	0.80	2.83	3.3	0.005	0.64	0.0	0.05	14.38	0.00	2.042	8.63	0.73	2.6	97.4	0.0	0.40	1.24	0.82	0.81	2.53	25248	3120	24	0	60	0	0	logfile
✘	7SYD	25522	2022-02-03	2021-11-24	3.1	3.98	—	3.4	0.007	0.79	2.0	0.05	14.22	0.00	2.068	8.34	1.99	10.4	89.4	0.2	-3.66	0.88	0.83	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10216	1322	4	0	0	0	0	logfile
✔	7SYE	25523	2022-02-03	2021-11-24	3.3	4.16	—	3.5	0.007	0.86	2.0	0.05	14.40	0.00	2.060	11.84	1.65	14.8	84.9	0.3	-4.43	0.85	0.77	2.18	3.5	0.003	0.69	0.0	0.04	14.96	0.00	2.114	11.59	0.35	10.8	89.1	0.1	-1.98	0.57	0.88	0.84	2.03	10216	1322	4	0	0	0	0	logfile

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