Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T4F	25675	2025-02-12	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.002	0.49	0.0	0.05	15.39	0.00	2.636	3.49	1.54	0.4	99.6	0.0	0.22	0.30	0.34	0.80	4.37	7224	980	4	0	0	0	0	logfile
✔	7XoP	33355	2025-02-11	2022-05-01	3.2	3.56	3.01	3.4	0.003	0.49	0.0	0.04	11.43	0.00	2.190	8.30	0.00	1.1	98.9	0.0	2.31	0.56	0.86	3.54	3.4	0.005	0.57	0.0	0.04	13.42	0.00	2.624	8.56	0.00	1.3	98.7	0.0	1.65	0.43	0.59	0.89	2.77	3855	524	1	0	0	0	0	logfile
✔	7Xoo	33354	2025-02-11	2022-05-01	3.0	3.53	2.84	3.3	0.003	0.46	0.0	0.04	11.95	0.00	2.333	7.79	0.00	1.1	98.9	0.0	2.57	0.58	0.89	1.90	3.3	0.004	0.52	0.0	0.04	13.98	0.00	2.626	6.77	0.50	1.3	98.7	0.0	2.43	0.42	0.58	0.91	2.17	3855	524	1	0	0	0	0	logfile
✔	8ESB	28574	2025-02-10	2022-10-13	3.12	3.62	3.10	3.5	0.006	0.63	0.0	0.05	14.31	0.00	2.245	5.09	0.00	4.5	95.5	0.0	-2.63	0.67	0.86	3.83	3.5	0.004	0.56	0.0	0.04	16.11	0.00	2.490	2.96	1.51	2.4	97.6	0.0	0.16	0.93	0.65	0.85	3.65	3140	384	3	0	0	0	0	logfile
✔	8i4H	35173	2025-02-11	2023-01-19	3.81	3.30	3.92	3.7	0.001	0.43	0.0	0.04	9.23	0.00	2.262	10.14	5.85	7.4	92.6	0.0	-4.65	0.69	0.64	1.02	3.8	0.005	0.92	0.0	0.05	14.55	0.01	2.269	23.17	4.60	14.7	85.3	0.0	-3.17	1.84	0.72	0.69	1.32	6539	833	2	0	0	0	0	logfile
✔	7XoQ	33356	2025-02-11	2022-05-01	3.3	3.58	3.06	3.4	0.003	0.54	0.0	0.04	11.31	0.00	2.277	8.56	0.00	1.0	99.0	0.0	2.13	0.56	0.85	2.21	3.4	0.003	0.53	0.0	0.04	14.69	0.00	2.580	6.64	2.23	1.0	99.0	0.0	2.40	0.38	0.58	0.87	1.35	3855	524	1	0	0	0	0	logfile
✔	8BYA	16325	2025-02-13	2022-12-12	3.38	3.67	3.49	3.7	0.005	0.80	0.0	0.05	15.66	0.00	1.446	13.76	0.88	5.0	94.9	0.1	-1.67	0.69	0.73	1.25	3.7	0.008	0.88	0.0	0.05	16.31	0.01	2.440	11.14	3.64	9.8	90.2	0.0	-1.66	0.42	0.71	0.77	1.51	8389	1145	7	0	0	0	0	logfile
✔	7Y49	33604	2025-02-12	2022-06-14	3.67	2.35	3.54	2.2	0.003	0.59	0.0	0.04	14.27	0.00	2.317	5.03	0.47	3.8	96.2	0.0	0.44	0.49	0.66	2.02	2.2	0.003	0.56	0.0	0.04	15.84	0.00	2.543	4.19	2.59	3.8	96.2	0.0	1.02	0.92	0.49	0.68	1.45	4169	565	1	0	0	0	0	logfile
✔	7ZXT	15016	2025-02-14	2022-05-22	2.9	3.45	2.85	3.2	0.003	0.63	0.0	0.04	12.07	0.00	2.028	8.21	0.00	3.5	96.0	0.5	3.83	0.66	0.82	1.47	3.2	0.004	0.67	0.0	0.04	15.15	0.00	2.391	6.51	2.52	3.1	96.4	0.5	3.71	0.92	0.59	0.88	1.26	9924	1236	6	0	0	0	0	logfile
✔	8EoJ	28377	2025-02-13	2022-10-03	3.07	3.47	3.19	3.2	0.002	0.55	0.0	0.04	11.26	0.00	2.216	7.60	3.76	4.1	95.9	0.0	-1.48	0.69	0.60	0.95	3.2	0.003	0.68	0.0	0.04	14.59	0.00	2.452	15.04	2.34	4.9	95.1	0.0	-0.22	1.72	0.70	0.61	0.93	9327	1219	2	0	0	0	0	logfile
✔	8AFX	15411	2025-02-11	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.73	0.0	0.05	12.31	0.00	2.615	7.16	0.00	6.1	93.9	0.0	-1.10	0.58	0.74	0.80	—	2498	321	1	0	0	0	0	logfile
✔	9F6o	50236	2025-02-11	2024-05-02	3.9	4.30	4.10	4.2	0.004	0.80	0.0	0.04	17.49	0.00	2.268	16.41	3.07	3.2	96.8	0.0	0.92	0.55	0.76	0.55	4.2	0.003	0.77	0.0	0.04	17.51	0.00	2.475	14.56	4.92	2.9	97.1	0.0	1.24	0.51	0.55	0.76	0.93	4571	591	2	0	0	0	0	logfile
✔	7YDM	33753	2025-02-12	2022-07-04	2.89	2.31	2.90	2.1	0.007	0.72	0.0	0.05	13.26	0.01	2.115	3.82	0.00	5.0	95.0	0.0	-0.11	0.79	0.80	3.14	2.1	0.003	0.55	0.0	0.04	16.18	0.00	2.445	2.22	2.04	3.8	96.2	0.0	1.11	1.16	0.80	0.82	1.89	8131	1031	5	0	0	0	0	logfile
✔	7XJ9	33222	2025-02-12	2022-04-15	3.27	3.75	3.48	3.6	0.003	0.57	0.0	0.04	12.83	0.00	2.122	7.72	0.00	5.4	94.6	0.0	-1.12	0.68	0.80	2.93	3.6	0.003	0.63	0.0	0.04	15.13	0.00	2.534	6.57	2.84	5.6	94.4	0.0	-1.16	0.42	0.66	0.82	2.63	8375	1074	8	0	0	0	0	logfile
✔	8CKV	16703	2025-02-14	2023-02-16	2.89	3.13	2.17	3.2	0.004	0.82	0.0	0.05	12.34	0.01	1.152	5.73	0.00	1.0	99.0	0.0	-0.51	0.61	0.76	4.15	3.2	0.004	0.57	0.0	0.04	15.90	0.00	2.646	6.28	1.31	1.3	98.7	0.0	1.53	0.44	0.62	0.79	4.01	9900	1272	6	0	0	0	0	logfile
✔	7XTK	33451	2025-02-10	2022-05-17	2.89	3.27	2.92	3.2	0.004	0.87	0.0	0.04	13.37	0.01	1.873	9.37	0.00	6.4	92.3	1.3	-1.05	0.59	0.83	2.77	3.2	0.003	0.66	0.0	0.04	14.88	0.01	2.584	7.34	1.18	6.6	92.8	0.5	0.75	1.73	0.57	0.83	1.73	3159	395	1	0	0	0	0	logfile
✔	8DZ5	27789	2025-02-13	2022-08-06	3.84	4.27	3.76	4.1	0.003	0.71	0.0	0.04	15.29	0.00	2.167	12.59	0.62	5.4	94.6	0.0	-0.63	0.74	0.82	2.12	4.1	0.006	0.76	0.0	0.05	16.40	0.00	2.495	12.71	3.32	7.5	92.5	0.0	-0.67	1.26	0.74	0.83	1.81	8950	1155	11	0	0	0	0	logfile
✔	7ZLA	14778	2025-02-13	2022-04-14	3.99	4.22	3.89	4.1	0.007	0.86	0.0	0.05	21.72	0.01	2.198	18.63	0.00	6.9	93.1	0.0	-1.94	0.71	0.67	0.80	4.1	0.003	0.64	0.0	0.04	22.58	0.00	2.419	9.47	2.06	5.0	94.8	0.1	-0.62	1.02	0.70	0.65	0.93	8624	822	4	92	0	0	0	logfile
✔	8H0P	34413	2025-02-13	2022-09-30	3.15	2.98	3.14	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.003	0.58	0.0	0.04	13.68	0.00	2.559	8.37	1.73	2.8	97.2	0.0	-0.18	0.78	0.57	0.78	2.63	8932	1137	6	0	0	0	0	logfile
✔	7XoR	33357	2025-02-11	2022-05-01	3.3	3.57	3.01	3.4	0.003	0.52	0.0	0.04	12.60	0.00	2.273	9.71	0.00	1.3	98.7	0.0	2.15	0.56	0.86	2.32	3.4	0.002	0.53	0.0	0.04	14.56	0.00	2.596	8.81	0.74	1.3	98.7	0.0	2.15	0.36	0.59	0.88	2.28	3855	524	1	0	0	0	0	logfile

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