Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E2G	27835	2025-02-12	2022-08-15	2.99	3.17	3.03	3.1	0.003	0.60	0.0	0.04	15.68	0.00	1.928	12.10	2.42	6.4	93.6	0.0	-1.77	0.46	0.74	2.37	3.1	0.003	0.58	0.0	0.04	15.78	0.00	2.341	8.40	0.88	6.4	93.6	0.0	-1.37	1.36	0.47	0.74	2.26	8110	523	1	0	0	0	4078	logfile
✔	7YJN	33875	2025-02-13	2022-07-20	3.4	3.63	3.43	3.6	0.019	1.74	21.0	0.13	15.89	0.01	1.776	26.04	8.37	11.1	87.0	1.9	-2.39	0.70	0.83	2.69	3.6	0.003	0.69	0.0	0.04	16.21	0.00	2.498	5.51	3.80	6.2	93.6	0.2	0.06	1.19	0.69	0.83	1.98	8528	1095	6	0	1	0	0	logfile
✔	7RQS	24635	2025-02-12	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.61	0.0	0.04	15.54	0.00	2.009	8.47	2.37	7.8	92.1	0.2	-0.98	0.57	0.70	0.69	2.22	7792	1074	2	0	1	0	0	logfile
✔	7YD1	33745	2025-02-10	2022-07-02	2.99	2.38	7.99	2.2	0.002	0.49	0.0	0.04	9.00	0.00	2.215	6.14	5.46	10.0	90.0	0.0	-4.06	0.75	0.74	3.20	2.2	0.007	0.80	0.0	0.05	13.40	0.01	2.520	10.60	3.01	11.6	88.4	0.0	-2.18	0.59	0.77	0.79	3.13	3305	428	3	0	0	0	0	logfile
✔	7JLU	22380	2025-02-13	2020-07-30	3.8	3.27	—	3.8	0.003	0.78	0.0	0.05	16.63	0.00	2.187	11.84	0.21	9.3	90.7	0.0	-1.56	0.74	0.78	1.46	3.8	0.002	0.66	0.0	0.04	17.88	0.00	2.463	7.37	1.58	7.6	92.4	0.0	-1.36	0.42	0.73	0.78	1.43	8592	1079	3	0	1	0	0	logfile
✔	8EX9	28655	2025-02-11	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.59	0.0	0.03	23.86	0.00	2.499	11.21	3.97	5.6	94.4	0.0	-0.74	0.24	0.62	0.72	4.25	4199	166	4	139	0	0	0	logfile
✔	7JLX	22383	2025-02-10	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.88	0.0	0.05	7.64	0.00	2.240	3.38	0.00	18.9	80.5	0.6	-3.12	2.45	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	8Q74	18203	2025-02-11	2023-08-15	3.68	4.60	3.68	4.2	0.004	1.02	0.0	0.05	14.01	0.01	1.633	20.98	0.15	15.9	83.2	0.9	-2.37	0.66	0.80	1.25	4.3	0.003	0.83	0.0	0.05	16.25	0.01	1.515	15.49	2.16	12.5	86.6	0.9	-1.34	1.04	0.66	0.80	0.62	5943	783	2	0	1	0	0	logfile
✔	8Q75	18204	2025-02-11	2023-08-15	3.2	4.13	3.25	3.8	0.006	1.56	0.0	0.05	14.77	0.01	1.828	20.97	0.62	12.3	86.1	1.6	-2.02	0.69	0.83	1.72	3.8	0.004	0.88	0.0	0.05	16.43	0.01	1.878	14.74	3.28	11.0	88.2	0.8	-1.17	0.66	0.69	0.84	1.34	5870	774	2	0	2	0	0	logfile
✔	8HBW	34645	2025-02-11	2022-10-31	2.57	2.69	2.51	2.7	0.010	1.05	0.0	0.05	16.26	0.01	2.199	7.29	0.00	2.2	97.8	0.0	1.60	0.63	0.87	4.58	2.8	0.003	0.57	0.0	0.04	16.80	0.00	2.523	5.78	2.37	1.7	98.3	0.0	2.99	0.88	0.61	0.88	4.00	3309	414	3	0	4	0	0	logfile
✔	7WPC	32682	2025-02-12	2022-01-23	2.57	2.17	—	2.0	0.004	0.72	0.0	0.05	17.02	0.01	2.253	2.54	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.005	0.65	0.0	0.05	17.18	0.00	1.873	7.62	1.27	4.5	95.5	0.0	-0.89	1.32	0.75	0.81	3.00	8057	980	6	0	9	0	0	logfile
✔	8Q73	18202	2025-02-11	2023-08-15	3.58	5.00	3.87	4.6	0.004	0.92	0.0	0.05	14.50	0.01	2.243	12.12	0.00	12.6	86.4	1.0	-2.53	0.65	0.76	0.56	4.6	0.003	0.85	0.0	0.05	16.44	0.00	2.575	14.04	1.86	12.2	86.9	0.9	-1.65	1.07	0.65	0.80	0.68	5909	779	1	0	0	0	0	logfile
✔	8DV2	27731	2025-02-11	2022-07-27	3.5	3.88	3.57	3.7	0.018	1.68	1.0	0.10	10.74	0.01	2.222	1.33	0.14	1.9	98.0	0.1	-0.17	0.78	0.79	2.69	3.7	0.003	0.70	0.0	0.05	15.43	0.00	2.523	9.16	3.29	3.0	96.8	0.1	1.31	4.15	0.78	0.80	1.66	6545	796	4	0	7	0	0	logfile
✔	7Y36	33590	2025-02-13	2022-06-10	2.8	3.76	2.72	3.7	0.007	0.73	0.0	0.05	12.89	0.00	2.152	7.06	0.00	4.2	95.8	0.0	-1.26	0.57	0.54	0.34	3.6	0.004	0.78	0.0	0.04	16.75	0.00	2.399	7.99	2.83	3.6	96.4	0.0	1.19	1.47	0.63	0.77	2.21	9206	1151	7	0	1	0	0	logfile
✘	8i6Q	35203	2025-02-11	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3975	810	4	0	0	0	0	logfile
✔	7PHG	13415	2025-02-11	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.72	0.0	0.05	13.56	0.00	2.407	17.00	0.00	14.3	85.7	0.0	-3.61	1.25	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	7UKG	26580	2025-02-13	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.49	0.0	0.04	14.07	0.00	2.625	5.23	0.65	1.4	98.6	0.0	3.75	0.18	0.69	0.89	4.25	8652	1128	10	0	4	0	0	logfile
✔	8Q3F	18126	2025-02-11	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.002	0.57	0.0	0.04	15.77	0.00	2.624	4.15	0.79	1.9	98.1	0.0	1.44	0.92	0.90	0.81	0.65	4599	578	1	0	0	0	0	logfile
✔	8SQU	40713	2025-02-12	2023-05-04	3.28	4.37	3.34	4.0	0.003	0.63	0.0	0.05	18.10	0.00	1.967	11.66	0.00	6.3	93.7	0.0	-0.59	0.75	0.62	1.04	4.0	0.004	0.75	0.0	0.04	20.00	0.00	1.944	15.23	1.46	7.3	92.7	0.0	-0.54	2.16	0.79	0.70	0.93	7761	841	5	41	1	0	0	logfile
✔	6X0L	21978	2025-02-12	2020-05-16	3.9	3.69	—	3.6	0.005	0.85	0.0	0.05	18.88	0.00	2.067	21.30	0.13	5.0	95.0	0.0	-1.57	0.59	0.67	1.05	3.6	0.004	0.77	0.0	0.04	20.32	0.00	2.515	15.80	2.93	4.5	95.5	0.0	0.18	0.70	0.60	0.68	1.14	8037	894	7	40	0	0	0	logfile

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