Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oKD	16926	2025-02-12	2023-03-28	3.1	3.30	3.12	3.3	0.003	0.51	0.0	0.03	21.86	0.00	2.207	7.88	0.39	6.5	93.5	0.0	-0.76	0.56	0.62	2.28	3.2	0.003	0.57	0.0	0.04	21.74	0.00	2.548	5.52	4.69	7.5	92.5	0.0	-0.85	1.01	0.72	0.79	1.81	7748	582	4	140	0	0	0	logfile
✔	8WV4	37864	2025-02-12	2023-10-23	3.3	3.25	3.29	3.3	0.002	0.49	0.0	0.04	14.13	0.00	1.938	5.08	3.33	1.0	99.0	0.0	-2.63	0.74	0.84	4.40	3.3	0.005	0.60	0.0	0.05	15.11	0.00	2.255	6.63	1.78	2.4	97.6	0.0	-1.09	1.17	0.75	0.87	4.02	8170	1030	10	0	10	0	0	logfile
✔	8XB4	38210	2025-02-11	2023-12-05	2.92	3.16	2.96	3.2	0.005	0.61	0.0	0.04	14.47	0.00	2.258	7.33	0.00	1.9	98.1	0.0	-1.88	0.61	0.81	3.82	3.2	0.003	0.56	0.0	0.04	14.69	0.00	2.559	5.94	1.55	1.9	98.1	0.0	1.29	1.15	0.59	0.81	3.25	4307	536	2	0	1	0	0	logfile
✔	8TEG	41185	2025-02-11	2023-07-06	2.15	2.08	2.12	2.2	0.007	0.74	0.0	0.04	15.68	0.00	2.185	1.68	1.05	1.4	98.6	0.0	1.81	0.63	0.88	4.56	2.2	0.003	0.57	0.0	0.04	16.00	0.00	2.609	2.12	1.48	1.4	98.6	0.0	2.13	1.20	0.63	0.88	4.84	4518	561	4	0	0	88	0	logfile
✔	9BAP	44410	2025-02-11	2024-04-04	2.88	3.32	2.89	3.3	0.003	0.58	0.0	0.04	15.77	0.00	2.159	9.48	0.84	3.3	96.7	0.0	-0.35	0.61	0.67	2.09	3.3	0.003	0.64	0.0	0.04	16.23	0.00	2.537	7.07	4.53	2.9	97.1	0.0	-0.07	0.32	0.62	0.68	1.65	6535	887	3	0	1	0	0	logfile
✔	8Yi7	39311	2025-02-11	2024-02-29	3.57	3.79	3.54	3.8	0.013	1.60	4.0	0.11	13.65	0.00	2.122	9.97	1.75	4.2	95.8	0.0	0.53	0.67	0.77	2.41	3.7	0.003	0.62	0.0	0.04	14.96	0.00	2.513	5.80	2.23	2.9	97.1	0.0	0.27	1.48	0.71	0.84	2.00	5586	697	6	0	4	0	0	logfile
✔	8V5D	42982	2025-02-11	2023-11-30	3.0	3.76	3.05	3.6	0.003	0.52	0.0	0.04	9.90	0.00	2.219	12.09	1.84	4.1	95.9	0.0	0.80	0.69	0.61	1.04	3.6	0.004	0.90	0.0	0.05	15.04	0.01	2.486	17.98	2.70	5.7	94.1	0.1	-0.39	2.09	0.68	0.62	0.91	6694	851	1	0	0	0	0	logfile
✔	8oZL	17313	2025-02-11	2023-05-09	3.4	3.28	1.87	3.4	0.012	1.52	0.0	0.10	10.88	0.00	2.574	1.49	0.00	1.2	98.8	0.0	2.33	0.37	0.73	3.42	3.4	0.003	0.51	0.0	0.04	13.79	0.00	2.591	1.56	0.97	0.7	99.3	0.0	2.49	0.42	0.55	0.88	1.86	6675	870	5	0	0	0	0	logfile
✔	8PQ5	17820	2025-02-11	2023-07-10	4.4	4.07	4.39	7.3	0.003	0.69	0.0	0.05	14.88	0.00	2.133	25.49	0.00	9.2	90.8	0.0	-1.84	0.79	0.69	—	7.2	0.003	0.74	0.0	0.05	14.96	0.01	2.472	20.59	0.15	9.2	90.8	0.0	-2.22	1.06	0.80	0.69	—	6300	782	5	0	2	0	0	logfile
✔	8K4o	36888	2025-02-12	2023-07-20	3.01	3.44	3.13	3.4	0.003	0.59	0.0	0.04	17.48	0.00	2.169	7.42	6.21	7.5	92.5	0.0	-1.17	0.64	0.87	2.22	3.4	0.003	0.57	0.0	0.04	17.44	0.00	2.546	4.59	4.83	7.3	92.7	0.0	-0.62	0.93	0.63	0.87	2.01	7946	1015	5	0	0	0	0	logfile
✔	8Y0Y	38823	2025-02-12	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.005	0.74	0.0	0.05	15.33	0.01	2.432	3.46	4.07	7.6	92.4	0.0	-1.04	1.20	0.66	0.78	3.21	5027	652	4	0	1	0	0	logfile
✔	8XQT	38588	2025-02-13	2024-01-05	2.94	2.26	3.07	2.0	0.003	0.59	0.0	0.04	15.34	0.00	2.168	16.18	0.21	3.1	96.9	0.0	0.33	0.74	0.74	2.16	2.0	0.004	0.63	0.0	0.04	16.10	0.00	2.369	10.90	3.80	2.7	97.3	0.0	0.11	1.11	0.76	0.76	2.04	8897	1125	6	0	2	0	0	logfile
✔	8Y86	39035	2025-02-12	2024-02-06	2.75	3.36	2.84	3.3	0.003	0.54	0.0	0.04	15.01	0.00	2.290	2.24	1.25	1.9	98.1	0.0	1.76	0.56	0.81	2.34	3.3	0.003	0.51	0.0	0.04	15.72	0.00	2.627	2.72	1.71	2.0	98.0	0.0	2.24	0.21	0.54	0.79	2.23	8060	1028	4	0	2	0	0	logfile
✔	9G9V	51158	2025-02-11	2024-07-25	3.32	3.86	3.33	3.7	0.007	0.75	0.0	0.05	11.17	0.00	2.245	1.73	0.53	1.5	98.5	0.0	-0.06	0.48	0.77	4.24	3.7	0.003	0.59	0.0	0.04	12.82	0.00	2.598	2.60	1.05	1.5	98.5	0.0	4.12	1.01	0.50	0.79	3.08	4073	522	4	0	9	0	0	logfile
✔	8ZSP	60423	2025-02-12	2024-06-05	3.14	2.39	3.22	3.2	0.008	0.72	0.0	0.05	14.31	0.00	2.247	9.97	0.12	3.2	96.8	0.0	0.24	0.75	0.75	2.72	2.2	0.003	0.61	0.0	0.04	16.23	0.00	2.542	8.15	1.16	2.4	97.6	0.0	0.68	0.92	0.75	0.79	2.29	8076	1033	6	0	1	0	0	logfile
✔	8XQo	38583	2025-02-13	2024-01-05	2.77	2.28	2.96	2.0	0.003	0.57	0.0	0.04	15.54	0.00	1.853	11.79	0.10	3.0	97.0	0.0	1.14	0.78	0.80	3.08	2.0	0.003	0.57	0.0	0.04	16.14	0.00	2.569	8.66	3.37	3.0	97.0	0.0	1.02	0.30	0.79	0.80	2.82	8958	1132	6	0	2	0	0	logfile
✔	8Wi2	37555	2025-02-14	2023-09-24	4.06	4.53	4.17	4.3	0.003	0.66	0.0	0.04	17.70	0.00	2.106	11.61	0.67	3.1	96.9	0.0	2.17	0.67	0.79	—	4.3	0.004	0.67	0.0	0.04	14.28	0.00	2.508	9.80	0.00	3.4	96.6	0.0	1.86	1.34	0.69	0.79	—	9537	1214	2	0	0	0	0	logfile
✔	8KCi	37105	2025-02-14	2023-08-07	3.94	4.27	3.89	4.2	0.004	0.67	0.0	0.04	18.61	0.00	2.001	9.47	1.35	10.0	89.8	0.3	-0.20	0.63	0.70	0.56	4.2	0.003	0.67	0.0	0.04	18.60	0.00	2.071	7.39	3.97	9.5	90.5	0.0	0.00	1.30	0.65	0.71	0.45	9515	1203	2	0	4	0	0	logfile
✔	8Wi4	37557	2025-02-14	2023-09-24	3.2	3.46	3.23	3.4	0.003	0.57	0.0	0.04	18.33	0.00	2.276	8.11	0.39	5.2	94.3	0.5	1.03	0.65	0.77	0.76	3.4	0.003	0.60	0.0	0.04	18.37	0.00	2.471	9.10	3.00	4.8	94.7	0.4	0.63	0.46	0.67	0.83	1.50	9443	1207	1	0	0	0	0	logfile
✔	8Y2E	38852	2025-02-11	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.52	0.0	0.04	16.68	0.00	2.629	2.37	4.07	3.3	96.7	0.0	1.78	0.26	0.58	0.84	2.97	4214	528	2	0	3	0	0	logfile

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