Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KXY	23067	2025-02-13	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.007	1.08	0.0	0.06	14.97	0.01	2.500	33.13	0.10	23.1	76.8	0.1	-5.21	1.26	0.65	0.64	—	9510	1181	2	0	0	0	0	logfile
✔	8DPG	27634	2025-02-12	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.69	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.003	0.62	0.0	0.04	13.36	0.00	2.525	3.96	1.95	2.3	97.7	0.0	1.60	1.10	0.76	0.73	1.84	8162	1093	6	0	2	0	0	logfile
✔	7WY0	32883	2025-02-13	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.69	0.0	0.04	15.19	0.00	2.531	10.13	2.70	5.0	95.0	0.0	0.03	0.46	0.75	0.76	2.65	8723	1112	5	0	0	0	0	logfile
✔	7S8L	24896	2025-02-12	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.7	0.002	0.56	0.0	0.04	15.35	0.00	2.482	2.26	2.92	3.1	96.9	0.0	1.54	0.33	0.84	0.83	3.81	8177	1096	6	0	0	0	0	logfile
✔	7SEP	25074	2025-02-12	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.6	0.003	0.68	0.0	0.05	16.81	0.00	2.464	10.62	5.96	2.9	97.1	0.0	-0.02	0.86	0.72	0.71	1.77	7641	930	2	0	0	0	0	logfile
✔	7WXU	32881	2025-02-12	2022-02-15	2.85	2.28	—	2.1	0.009	0.84	0.0	0.05	13.41	0.01	2.209	1.23	0.00	5.8	94.2	0.0	-1.00	0.78	0.78	3.95	2.1	0.003	0.61	0.0	0.04	15.75	0.00	2.584	3.32	2.14	3.0	97.0	0.0	0.69	0.38	0.80	0.81	2.33	8116	1034	5	0	0	0	0	logfile
✔	7UWJ	26833	2025-02-11	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.20	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.003	0.67	0.0	0.04	14.79	0.01	2.564	8.29	3.18	5.9	94.1	0.0	-2.00	0.43	0.68	0.65	1.86	5314	664	6	0	6	0	0	logfile
✔	8F7X	28912	2025-02-13	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	2.87	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	3.3	0.002	0.58	0.0	0.04	14.69	0.00	2.431	5.57	2.47	2.0	98.0	0.0	1.38	1.10	0.63	0.86	2.37	8902	1145	6	0	0	0	0	logfile
✔	7WY5	32884	2025-02-12	2022-02-15	2.83	2.25	—	2.0	0.005	0.75	0.0	0.05	12.83	0.00	1.986	1.32	0.00	5.4	94.6	0.0	-0.28	0.77	0.76	3.50	2.0	0.005	0.66	0.0	0.04	15.62	0.00	2.511	4.26	1.27	4.5	95.5	0.0	0.68	0.37	0.79	0.79	2.72	8009	1013	5	0	0	0	0	logfile
✔	8EL7	28223	2025-02-11	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.002	0.43	0.0	0.04	14.75	0.00	2.623	1.55	1.52	1.6	98.4	0.0	1.92	0.25	0.57	0.80	2.18	4562	604	3	0	0	5	0	logfile
✔	8EL8	28224	2025-02-11	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.002	0.46	0.0	0.04	15.23	0.00	2.631	1.70	0.68	2.3	97.7	0.0	1.60	0.27	0.66	0.85	1.75	4467	597	2	0	0	0	0	logfile
✔	8H8J	34549	2025-02-13	2022-10-23	3.2	2.26	3.27	2.1	0.003	0.66	0.0	0.04	10.44	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	2.0	0.003	0.63	0.0	0.04	13.94	0.00	2.534	10.31	3.02	3.2	96.8	0.0	0.82	0.53	0.74	0.77	2.30	8842	1139	6	0	5	0	0	logfile
✔	7SZi	25567	2025-02-12	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.55	0.0	0.04	14.30	0.00	2.536	2.58	0.96	4.3	95.6	0.1	0.07	0.26	0.72	0.88	5.01	8089	1038	4	0	0	0	0	logfile
✔	7S8N	24898	2025-02-12	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.07	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.1	0.005	0.65	0.0	0.04	15.78	0.00	2.476	2.90	2.08	3.9	96.1	0.0	1.18	1.00	0.82	0.82	2.74	8154	1090	6	0	1	0	0	logfile
✔	7VUH	32128	2025-02-13	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.68	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.003	0.63	0.0	0.04	15.88	0.00	2.529	12.04	2.44	6.2	93.8	0.0	-1.12	0.38	0.71	0.73	2.28	8302	1042	6	0	1	0	0	logfile
✔	7U7N	26382	2025-02-12	2022-03-07	3.47	2.42	3.51	2.0	0.004	0.69	0.0	0.05	19.36	0.01	2.164	8.81	0.89	2.6	97.4	0.0	1.04	0.74	0.76	2.33	2.0	0.003	0.64	0.0	0.04	16.77	0.00	2.504	8.40	3.57	2.7	97.3	0.0	0.94	0.90	0.74	0.77	2.30	7284	884	10	0	16	0	0	logfile
✔	6WBY	21601	2025-02-13	2020-03-27	3.4	3.73	3.45	3.6	0.010	1.04	0.0	0.06	12.68	0.01	2.042	3.28	0.32	6.3	93.6	0.1	-5.12	0.78	0.87	3.21	3.6	0.003	0.63	0.0	0.04	13.54	0.00	2.215	4.05	1.61	4.1	95.9	0.0	-0.24	0.36	0.76	0.87	2.50	9156	1250	2	0	2	0	0	logfile
✔	7S8P	24900	2025-02-12	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.74	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.003	0.64	0.0	0.04	15.36	0.00	2.487	1.91	3.73	5.1	94.9	0.0	0.31	0.36	0.84	0.84	3.97	8093	1089	6	0	1	0	0	logfile
✔	8PPo	17806	2025-02-10	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	14.12	0.00	2.639	0.29	1.04	0.0	100.0	0.0	1.15	0.38	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile
✔	7WZ7	32905	2025-02-13	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.005	0.72	0.0	0.05	14.93	0.00	2.507	11.39	2.83	5.2	94.8	0.0	0.29	1.18	0.72	0.73	1.67	8676	1108	5	0	0	0	0	logfile

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