Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CoM	16777	2025-02-14	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.54	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.004	0.59	0.0	0.03	28.52	0.00	2.500	7.79	2.93	1.7	98.3	0.0	1.99	0.91	0.70	0.83	1.30	10705	708	10	254	0	0	0	logfile
✔	6DDF	7869	2025-02-12	2018-05-10	3.5	4.16	3.83	4.1	0.006	1.01	0.0	0.06	10.48	0.01	2.228	7.85	0.72	8.3	91.5	0.1	-4.62	0.72	0.72	2.22	4.1	0.003	0.74	0.0	0.04	15.66	0.00	2.433	11.21	3.86	5.1	94.9	0.0	-1.32	2.25	0.69	0.74	1.28	6808	890	7	0	2	0	0	logfile
✔	6Z3Z	11067	2025-02-11	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.96	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.6	0.004	0.84	0.0	0.04	16.12	0.00	2.479	15.64	3.39	7.7	92.3	0.0	-0.13	0.68	0.64	0.73	0.85	6115	769	2	0	0	0	0	logfile
✔	8CGH	16643	2025-02-10	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.005	0.92	0.0	0.05	17.11	0.00	2.632	0.97	0.40	5.4	94.6	0.0	-4.91	0.92	0.53	0.93	6.74	2710	400	5	0	0	0	0	logfile
✔	7SCG	25034	2025-02-13	2021-09-28	3.0	3.41	—	3.3	0.005	0.61	0.0	0.04	12.87	0.00	2.274	9.34	0.00	4.4	95.6	0.0	-0.30	0.75	0.88	4.53	3.3	0.002	0.56	0.0	0.04	15.13	0.00	2.529	3.69	2.03	3.0	97.0	0.0	0.93	0.33	0.72	0.89	3.42	8539	1121	6	0	1	2	0	logfile
✔	8CSZ	26976	2025-02-13	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	23.81	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.006	0.64	0.0	0.04	23.46	0.00	1.910	7.66	1.65	5.1	94.9	0.0	-0.39	1.11	0.84	0.88	3.39	8948	494	5	236	3	0	0	logfile
✔	7F6V	31482	2025-02-11	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	13.91	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.66	0.0	0.04	17.25	0.00	2.640	8.65	1.76	3.7	96.3	0.0	4.56	0.84	0.61	0.78	1.17	5314	626	4	0	2	0	0	logfile
✔	7DUQ	30866	2025-02-14	2021-01-11	2.5	2.82	—	2.8	0.006	0.82	0.0	0.06	13.62	0.00	2.126	10.72	0.30	2.3	97.7	0.0	-0.86	0.66	0.78	3.15	2.8	0.004	0.59	0.0	0.04	15.64	0.00	2.494	8.21	2.17	2.6	97.4	0.0	1.12	1.57	0.57	0.77	2.37	9602	1174	7	0	8	0	0	logfile
✔	8G8E	29846	2025-02-10	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.39	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.004	0.63	0.0	0.03	27.94	0.00	2.436	15.44	0.00	2.9	97.1	0.0	0.35	1.83	0.91	0.84	—	2464	140	3	64	0	0	0	logfile
✔	7CR2	30445	2025-02-12	2020-08-12	3.2	3.42	—	3.6	0.014	0.98	0.0	0.05	16.20	0.00	2.052	39.29	0.48	3.6	96.4	0.0	-2.81	0.58	0.80	2.35	3.6	0.003	0.56	0.0	0.04	17.31	0.00	2.652	6.18	2.74	3.4	96.6	0.0	2.30	0.69	0.55	0.79	1.98	8276	1004	8	0	4	0	0	logfile
✔	7RXD	24729	2025-02-13	2021-08-22	3.6	3.31	—	3.7	0.003	0.58	0.0	0.04	13.84	0.01	2.138	9.41	0.21	2.6	97.4	0.0	0.47	0.69	0.75	2.16	3.7	0.003	0.63	0.0	0.04	15.69	0.00	2.512	8.39	2.17	3.0	97.0	0.0	0.61	0.41	0.70	0.77	1.72	9007	1148	6	0	2	0	0	logfile
✔	7N98	24252	2025-02-11	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.65	0.0	0.04	16.80	0.01	2.631	7.05	2.41	7.0	93.0	0.0	0.13	0.49	0.49	0.80	1.33	3625	473	1	0	0	0	0	logfile
✔	7S82	24889	2025-02-13	2021-09-17	3.5	3.79	3.54	3.8	0.005	0.72	0.0	0.04	13.22	0.00	2.097	17.60	0.00	7.7	92.3	0.0	-1.35	0.78	0.82	2.97	3.8	0.004	0.73	0.0	0.04	15.85	0.00	2.515	12.87	1.29	4.0	96.0	0.0	-1.18	1.09	0.78	0.82	1.82	4904	634	4	0	0	0	0	logfile
✔	8JLZ	36409	2025-02-12	2023-06-04	3.09	2.32	3.33	2.1	0.005	0.71	0.0	0.04	13.33	0.01	2.170	6.28	0.12	3.7	96.3	0.0	-0.56	0.78	0.77	2.77	2.1	0.003	0.55	0.0	0.04	15.44	0.00	2.525	3.92	2.35	2.2	97.8	0.0	0.95	0.37	0.79	0.79	2.22	7730	1015	6	0	1	0	0	logfile
✔	7UTN	26782	2025-02-12	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	23.53	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.56	0.0	0.03	23.19	0.00	2.517	6.83	0.58	1.5	98.5	0.0	0.97	0.26	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	6V1Q	21015	2025-02-13	2019-11-20	3.11	4.04	—	3.5	0.008	1.01	6.0	0.07	17.13	0.02	1.396	16.09	7.48	9.4	90.2	0.4	-4.86	0.54	0.77	1.71	3.5	0.003	0.71	0.0	0.04	16.02	0.00	2.572	11.03	2.46	7.6	92.4	0.0	-1.08	2.57	0.53	0.80	1.29	8825	1076	3	0	1	0	0	logfile
✔	7TRY	26103	2025-02-12	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.44	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.005	0.78	0.0	0.05	14.35	0.00	2.349	15.00	3.55	3.4	96.6	0.0	1.33	2.52	0.69	0.79	0.99	8340	1211	6	0	0	0	0	logfile
✔	8ioD	35616	2025-02-12	2023-03-10	2.59	2.77	2.63	2.8	0.005	0.80	0.0	0.05	14.07	0.01	2.038	13.91	0.00	5.0	95.0	0.0	-0.83	0.53	0.66	2.35	2.8	0.002	0.57	0.0	0.04	16.48	0.00	2.323	8.98	1.72	2.9	97.1	0.0	0.47	0.37	0.52	0.67	1.66	8061	1023	8	0	3	0	0	logfile
✔	7WoG	32651	2025-02-11	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.05	10.93	0.01	2.441	16.02	0.00	13.6	86.4	0.0	-2.77	0.94	0.53	0.54	—	3362	433	3	0	0	0	0	logfile
✔	6VXo	21446	2025-02-12	2020-02-22	3.5	3.81	—	3.8	0.012	1.40	0.0	0.05	24.97	0.00	2.125	14.64	21.57	12.2	87.4	0.4	-3.90	0.63	0.83	0.88	3.8	0.003	0.77	0.0	0.04	18.98	0.00	2.496	9.40	7.23	8.6	91.4	0.0	0.06	0.64	0.60	0.80	0.91	8048	904	8	0	12	0	0	logfile

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