Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WT9	32772	2025-02-11	2022-02-04	4.3	4.38	—	4.3	0.006	1.27	0.0	0.07	13.29	0.01	2.304	5.34	0.27	8.3	91.7	0.0	-3.40	0.71	0.73	—	4.2	0.004	0.79	0.0	0.05	13.44	0.00	2.441	16.16	0.00	10.4	89.6	0.0	-2.77	1.91	0.73	0.76	—	3343	430	3	0	0	0	0	logfile
✔	7Y6N	33644	2025-02-10	2022-06-21	4.4	3.58	4.16	4.0	0.003	0.84	0.0	0.05	12.98	0.01	2.222	15.34	0.00	12.1	87.9	0.0	-2.77	0.46	0.56	—	3.7	0.003	0.82	0.0	0.05	14.04	0.00	2.534	10.43	0.00	11.4	88.6	0.0	-2.60	1.14	0.52	0.62	—	3327	426	4	0	1	0	0	logfile
✔	8GH8	40036	2025-02-11	2023-03-09	4.3	4.08	3.85	4.0	0.004	0.79	0.0	0.05	26.60	0.01	2.219	10.05	0.23	12.7	86.8	0.5	-3.65	0.48	0.44	—	4.0	0.003	0.71	0.0	0.04	26.17	0.01	2.494	8.36	0.00	10.7	89.1	0.2	-3.66	1.06	0.53	0.51	—	6991	559	8	136	0	0	0	logfile
✔	9C6K	45249	2025-02-10	2024-06-07	2.94	3.79	2.95	3.1	0.007	0.76	0.0	0.04	26.38	0.01	1.888	17.91	0.00	0.0	0.0	0.0	—	0.89	0.84	—	3.1	0.007	0.71	0.0	0.04	25.52	0.00	1.871	14.48	0.00	0.0	0.0	0.0	—	0.87	0.89	0.87	—	1745	0	2	80	9	0	0	logfile
✔	8DH9	27433	2025-02-14	2022-06-25	4.5	3.05	4.86	4.5	0.003	0.65	0.0	0.04	12.03	0.00	2.073	13.96	0.08	2.8	96.9	0.2	0.38	0.65	0.52	—	2.3	0.004	0.80	0.0	0.05	12.94	0.01	2.473	14.94	0.00	5.1	94.8	0.1	-0.66	1.16	0.69	0.61	—	10229	1281	4	0	0	0	0	logfile
✔	7XoP	33355	2025-02-11	2022-05-01	3.2	3.56	3.01	3.4	0.003	0.49	0.0	0.04	11.43	0.00	2.190	8.30	0.00	1.1	98.9	0.0	2.31	0.56	0.86	3.54	3.4	0.005	0.57	0.0	0.04	13.42	0.00	2.624	8.56	0.00	1.3	98.7	0.0	1.65	0.43	0.59	0.89	2.77	3855	524	1	0	0	0	0	logfile
✔	7YC8	33736	2025-02-12	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.970	59.75	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	8AFX	15411	2025-02-11	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.73	0.0	0.05	12.31	0.00	2.615	7.16	0.00	6.1	93.9	0.0	-1.10	0.58	0.74	0.80	—	2498	321	1	0	0	0	0	logfile
✔	8D8Q	27254	2025-02-11	2022-06-08	4.2	3.68	34.06	3.7	0.012	1.23	0.0	0.05	11.02	0.01	2.139	1.66	0.53	1.5	98.3	0.2	2.20	0.67	0.74	—	3.6	0.004	0.74	0.0	0.05	13.16	0.00	2.502	12.92	0.00	5.5	94.5	0.0	-0.70	1.44	0.67	0.76	—	5202	669	6	0	1	0	0	logfile
✔	7ZKB	14761	2025-02-13	2022-04-12	4.7	4.80	4.47	4.7	0.008	1.05	2.0	0.06	15.45	0.00	2.224	16.22	0.21	6.9	93.1	0.0	0.07	0.56	0.74	—	4.7	0.003	0.70	0.0	0.04	14.88	0.00	2.409	12.09	0.00	6.0	94.0	0.0	0.04	1.00	0.55	0.74	—	9043	1158	2	0	1	0	0	logfile
✔	7JLX	22383	2025-02-10	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.88	0.0	0.05	7.64	0.00	2.240	3.38	0.00	18.9	80.5	0.6	-3.12	2.45	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	8GP5	34190	2025-02-11	2022-08-25	4.05	4.31	3.42	4.2	0.005	0.80	0.0	0.06	16.71	0.00	2.199	12.31	0.18	5.4	94.6	0.0	-1.09	0.61	0.79	—	4.2	0.003	0.74	0.0	0.05	13.74	0.00	2.383	10.00	0.00	6.1	93.9	0.0	-0.98	1.15	0.61	0.79	—	5470	646	11	0	26	0	0	logfile
✔	8FZQ	29637	2025-02-13	2023-01-29	4.3	3.97	4.18	4.1	0.002	0.53	0.0	0.04	15.43	0.00	1.999	8.42	0.10	2.1	97.9	0.0	1.00	0.59	0.69	—	4.1	0.003	0.60	0.0	0.04	14.79	0.00	1.991	8.10	0.00	2.1	97.9	0.0	1.11	1.01	0.63	0.76	—	9244	1133	3	0	23	0	0	logfile
✔	8iLQ	35540	2025-02-12	2023-03-04	4.3	4.22	—	4.2	0.003	0.68	0.0	0.05	18.13	0.00	2.208	9.06	0.23	13.1	86.7	0.2	-2.78	0.53	0.74	—	4.2	0.004	0.75	0.0	0.05	14.09	0.00	2.532	6.78	0.00	13.6	85.8	0.6	-2.92	0.44	0.54	0.82	—	7729	1010	5	0	6	0	0	logfile
✔	8FEL	29032	2025-02-13	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.56	0.0	0.04	13.04	0.00	2.425	9.44	0.00	3.8	96.2	0.0	0.17	1.71	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	7WLB	32580	2025-02-14	2022-01-12	4.1	3.63	—	3.5	0.002	0.44	0.0	0.04	8.68	0.00	2.205	6.88	3.92	4.5	95.5	0.0	-4.05	0.74	0.72	—	3.5	0.003	0.70	0.0	0.04	10.94	0.00	2.400	12.46	0.00	5.5	94.5	0.0	-0.60	1.42	0.75	0.75	—	10193	1327	2	0	0	0	0	logfile
✔	8CR2	16802	2025-02-12	2023-03-07	4.2	4.42	4.19	5.1	0.004	1.07	1.0	0.06	13.24	0.01	1.914	20.12	0.00	5.8	94.2	0.0	-3.18	0.41	0.29	—	4.4	0.003	0.83	0.0	0.05	13.81	0.00	2.353	11.87	0.00	3.2	96.8	0.0	0.62	1.55	0.63	0.66	—	6838	855	5	0	1	0	0	logfile
✔	8FEJ	29029	2025-02-14	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.57	0.0	0.04	12.58	0.00	2.425	7.73	0.00	5.7	94.3	0.0	-0.57	1.32	0.91	0.76	—	10464	1368	3	0	0	0	0	logfile
✔	7PHG	13415	2025-02-11	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.72	0.0	0.05	13.56	0.00	2.407	17.00	0.00	14.3	85.7	0.0	-3.61	1.25	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	8AFM	15402	2025-02-12	2022-07-18	4.8	3.13	4.72	3.9	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.43	0.25	8.2	91.8	0.0	-3.48	0.46	0.51	—	3.0	0.003	0.76	0.0	0.04	15.52	0.00	2.439	11.45	0.00	3.3	96.7	0.0	-0.67	2.12	0.48	0.56	—	7842	1010	12	0	0	0	0	logfile

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