Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EJG	28181	2025-02-14	2022-09-16	3.13	3.83	3.14	3.5	0.025	1.94	3.0	0.17	20.95	0.01	2.106	0.88	0.00	6.4	93.6	0.0	-1.09	0.86	0.81	3.20	3.5	0.004	0.88	0.0	0.05	14.16	0.00	2.348	7.55	2.17	8.0	91.7	0.3	-0.85	1.51	0.86	0.81	2.69	9966	1083	36	0	102	0	0	logfile
✔	8U53	41911	2025-02-13	2023-09-12	2.6	2.33	2.54	2.9	0.024	1.71	0.0	0.10	15.25	0.01	2.498	0.88	0.00	1.1	98.9	0.0	0.71	0.78	0.81	4.12	2.9	0.003	0.59	0.0	0.04	17.16	0.00	2.503	5.66	1.51	2.2	97.8	0.0	1.64	0.62	0.75	0.82	2.40	9562	1074	6	0	98	0	0	logfile
✔	7UUQ	26800	2025-02-11	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.884	46.76	13.19	67.9	30.4	1.8	-10.54	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	8EJF	28180	2025-02-14	2022-09-16	3.72	4.47	3.85	3.9	0.024	1.99	0.0	0.16	17.18	0.01	2.299	2.10	0.00	9.0	91.0	0.0	-1.87	0.85	0.78	2.04	4.0	0.005	0.93	0.0	0.05	14.35	0.00	2.400	14.23	1.66	12.5	86.9	0.6	-2.20	1.43	0.88	0.82	2.13	9801	1080	36	0	90	0	0	logfile
✔	8Q96	18269	2025-02-10	2023-08-19	3.09	3.01	2.64	3.2	0.009	1.24	0.0	0.07	10.14	0.01	2.529	1.50	0.00	5.6	94.4	0.0	-3.54	0.47	0.86	5.83	3.1	0.004	0.69	0.0	0.05	14.45	0.00	2.608	3.24	4.00	5.6	94.4	0.0	-3.33	1.19	0.45	0.84	4.93	2100	224	12	0	88	0	0	logfile
✔	8EJD	28178	2025-02-14	2022-09-16	3.8	4.33	3.84	4.1	0.022	1.83	0.0	0.17	17.20	0.02	2.400	2.31	0.00	4.7	95.3	0.0	-0.17	0.83	0.78	2.34	4.1	0.005	1.08	1.0	0.05	14.14	0.00	2.154	13.96	2.28	8.0	91.9	0.1	-0.02	1.89	0.83	0.78	2.24	9804	1086	36	0	87	0	0	logfile
✘	8JL4	36388	2025-02-14	2023-06-02	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9588	1066	8	0	86	0	0	logfile
✔	8W4A	37264	2025-02-14	2023-08-23	2.69	2.93	2.74	3.0	0.006	0.57	0.0	0.04	14.93	0.00	2.212	5.31	0.00	1.3	98.7	0.0	1.30	0.64	0.87	4.21	3.0	0.003	0.51	0.0	0.04	15.44	0.00	2.546	4.37	0.87	1.3	98.7	0.0	2.23	0.24	0.68	0.88	3.68	9588	1066	8	0	86	0	0	logfile
✔	7RX0	24721	2025-02-14	2021-08-20	3.89	4.63	—	4.5	0.006	0.85	1.0	0.05	15.61	0.00	1.666	29.17	0.00	7.1	92.9	0.0	-2.61	0.60	0.82	0.77	4.5	0.004	0.91	0.0	0.05	17.17	0.01	1.018	15.41	2.93	4.5	95.5	0.0	-0.31	0.78	0.59	0.81	0.55	9673	1182	7	0	83	0	0	logfile
✔	8JL3	36387	2025-02-13	2023-06-02	2.59	2.77	2.59	2.8	0.006	0.63	0.0	0.04	15.27	0.01	2.231	4.60	0.00	1.3	98.7	0.0	1.16	0.70	0.89	4.64	2.8	0.003	0.52	0.0	0.04	15.72	0.00	2.539	3.74	1.86	1.2	98.8	0.0	2.32	0.24	0.69	0.89	3.87	9408	1054	8	0	82	0	0	logfile
✔	7PBW	13307	2025-02-14	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.003	0.72	0.0	0.04	14.22	0.01	2.236	6.63	0.15	0.0	100.0	0.0	4.78	0.28	0.77	0.90	7.22	9500	873	54	0	81	230	0	logfile
✔	8JL1	36386	2025-02-13	2023-06-02	2.8	3.06	2.79	3.1	0.007	0.61	0.0	0.04	15.09	0.00	2.226	4.15	0.00	2.4	97.6	0.0	1.13	0.68	0.89	4.20	3.1	0.003	0.49	0.0	0.04	15.24	0.00	2.465	4.25	1.53	1.7	98.3	0.0	2.36	0.24	0.63	0.87	3.88	9384	1054	8	0	80	0	0	logfile
✔	8JKV	36376	2025-02-13	2023-06-02	2.87	3.16	2.86	3.2	0.007	0.65	0.0	0.05	15.12	0.00	2.253	5.12	0.00	2.3	97.7	0.0	0.73	0.65	0.85	4.23	3.2	0.003	0.49	0.0	0.04	14.39	0.00	2.620	4.61	0.88	1.3	98.7	0.0	2.10	0.86	0.64	0.85	3.96	9266	1054	8	0	76	0	0	logfile
✔	7SGD	25107	2025-02-13	2021-10-05	3.97	4.40	3.79	4.1	0.024	1.80	3.0	0.17	14.41	0.01	2.477	1.47	0.00	1.8	98.2	0.0	0.20	0.84	0.81	2.57	4.1	0.005	0.94	0.0	0.05	15.11	0.00	2.417	14.49	3.95	4.4	95.5	0.1	0.57	1.50	0.85	0.83	2.08	9120	1014	39	0	75	0	0	logfile
✔	6JMQ	9849	2025-02-14	2019-03-13	3.31	3.52	3.25	3.5	0.005	0.96	0.0	0.05	14.03	0.01	2.293	3.84	0.29	4.3	95.6	0.1	-5.03	0.71	0.79	2.84	3.5	0.003	0.69	0.0	0.04	14.76	0.00	2.495	7.53	3.27	3.8	96.2	0.1	-1.15	0.51	0.75	0.83	2.66	9950	1223	12	0	74	0	0	logfile
✔	8oH2	16876	2025-02-11	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.004	0.62	0.0	0.05	18.01	0.00	2.210	1.49	2.55	0.5	99.5	0.0	-2.32	1.10	0.50	0.89	6.19	3702	468	102	0	72	30	0	logfile
✔	6JMR	9850	2025-02-14	2019-03-13	4.1	4.26	4.05	4.1	0.007	1.06	0.0	0.06	14.10	0.01	2.239	7.77	0.56	7.1	92.8	0.1	-4.05	0.83	0.78	—	4.1	0.003	0.73	0.0	0.04	13.28	0.01	2.459	9.75	0.00	5.7	94.3	0.0	-1.96	0.79	0.83	0.78	—	9809	1223	12	0	69	0	0	logfile
✘	6oVH	20212	2025-02-14	2019-05-07	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10895	1272	36	0	68	171	0	logfile
✘	8AN3	15531	2025-02-13	2022-08-04	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.24	—	—	1.97	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.00	—	—	—	1.66	8721	1040	20	0	68	0	0	logfile
✔	8EJE	28179	2025-02-14	2022-09-16	3.69	3.95	3.70	3.9	0.023	2.14	0.0	0.16	15.07	0.01	2.317	2.39	0.00	6.0	94.0	0.0	-0.11	0.82	0.79	2.65	3.8	0.004	0.95	0.0	0.05	15.38	0.00	2.401	10.71	4.63	9.7	90.3	0.0	-0.83	1.46	0.82	0.79	2.06	9426	1068	33	0	66	0	0	logfile

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