Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5V4S	8632	2025-02-14	2017-03-10	4.2	4.02	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.58	0.73	—	4.1	0.005	0.68	0.0	0.04	12.89	0.00	2.587	4.09	0.00	3.7	96.3	0.0	2.23	1.03	0.60	0.77	—	10756	1548	4	0	0	0	0	logfile
✔	5V4S	8633	2025-02-14	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.004	0.63	0.0	0.04	10.27	0.00	2.359	10.97	0.00	2.9	97.1	0.0	2.95	0.85	0.62	0.70	—	10756	1548	4	0	0	0	0	logfile
✘	7Fii	31598	2025-02-14	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	8CE7	16600	2025-02-14	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✔	8JCZ	36170	2025-02-14	2023-05-12	3.0	3.18	2.98	3.2	0.003	0.57	0.0	0.18	14.97	0.00	2.247	9.10	0.22	4.4	95.6	0.0	0.07	0.65	0.75	2.15	3.2	0.004	0.61	0.0	0.04	13.96	0.00	2.536	6.83	2.16	6.3	93.7	0.0	-0.20	0.41	0.66	0.80	2.27	10540	1504	4	0	4	0	0	logfile
✔	6L1U	0803	2025-02-14	2019-09-30	3.37	3.54	—	3.5	0.011	0.92	0.0	0.06	15.74	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.5	0.005	0.73	0.0	0.05	16.84	0.00	2.414	9.48	9.22	15.7	84.3	0.0	-4.79	1.95	0.47	0.85	2.96	10515	1500	15	0	0	0	0	logfile
✔	7MTQ	23994	2025-02-14	2021-05-13	3.65	2.61	—	2.2	0.011	0.88	1.0	0.05	14.58	0.01	2.205	8.45	0.56	3.2	96.8	0.0	0.26	0.70	0.73	2.03	2.2	0.005	0.63	0.0	0.04	14.90	0.00	2.505	5.89	2.34	4.0	96.0	0.0	0.34	0.41	0.72	0.75	1.78	10388	1486	4	0	4	0	0	logfile
✔	8CVP	27012	2025-02-14	2022-05-18	3.4	3.75	3.50	3.7	0.003	0.58	0.0	0.04	13.05	0.00	2.231	4.87	0.12	6.1	93.8	0.1	-1.69	0.69	0.74	3.06	3.7	0.004	0.64	0.0	0.05	14.93	0.00	2.517	5.36	2.88	6.7	93.3	0.0	-1.90	0.38	0.76	0.82	2.89	10112	1484	3	0	1	0	0	logfile
✔	8D7X	27237	2025-02-14	2022-06-07	3.4	3.65	3.41	3.5	0.006	0.65	1.0	0.05	13.45	0.00	2.219	8.94	0.60	8.6	91.2	0.2	-2.20	0.74	0.76	3.37	3.5	0.003	0.58	0.0	0.04	14.60	0.00	2.532	6.05	2.52	6.8	93.2	0.0	-1.77	0.33	0.82	0.85	2.53	10108	1484	3	0	1	0	0	logfile
✔	8D7Y	27238	2025-02-14	2022-06-07	3.4	3.72	3.45	3.6	0.003	0.58	0.0	0.05	13.76	0.00	2.276	11.11	0.72	6.8	92.6	0.6	-2.04	0.76	0.77	2.82	3.6	0.004	0.59	0.0	0.05	14.92	0.00	2.566	6.33	1.81	7.1	92.8	0.1	-1.91	0.38	0.80	0.83	2.64	10086	1484	3	0	1	0	0	logfile
✔	7WiH	32530	2025-02-14	2022-01-03	3.68	4.13	—	4.1	0.006	1.03	0.0	0.06	14.90	0.01	2.024	5.51	0.73	10.8	88.9	0.3	-6.08	0.77	0.78	2.12	4.1	0.003	0.70	0.0	0.04	14.79	0.00	2.605	4.64	3.05	10.1	89.9	0.0	-3.18	0.48	0.76	0.78	1.77	10002	1482	4	0	4	0	0	logfile
✔	9DW5	47236	2025-02-14	2024-10-08	3.8	4.25	3.99	4.1	0.005	0.76	0.0	0.04	14.41	0.00	2.012	6.90	2.49	2.8	97.2	0.1	0.83	0.63	0.78	1.61	4.1	0.003	0.64	0.0	0.04	14.90	0.00	1.973	7.18	5.26	3.6	96.4	0.0	0.95	0.74	0.62	0.78	1.36	9748	1464	3	0	3	0	0	logfile
✔	7RW9	24711	2025-02-14	2021-08-19	3.9	4.54	3.87	4.2	0.003	0.63	0.0	0.04	13.18	0.00	2.140	7.83	0.11	6.4	93.3	0.3	0.44	0.78	0.69	1.28	4.2	0.004	0.67	0.0	0.04	14.93	0.00	2.479	7.58	1.80	4.8	95.0	0.3	1.37	0.53	0.89	0.84	0.91	10365	1456	4	0	0	0	0	logfile
✔	8iXL	35795	2025-02-14	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.45	0.0	0.04	16.16	0.00	2.555	5.30	2.26	0.4	99.6	0.0	5.66	1.12	0.68	0.85	0.96	10970	1455	35	0	0	0	0	logfile
✔	7ZRL	14918	2025-02-14	2022-05-04	4.0	3.62	3.94	3.9	0.005	0.91	0.0	0.05	14.30	0.01	2.197	9.04	0.00	5.0	95.0	0.0	-1.26	0.66	0.79	—	3.9	0.003	0.70	0.0	0.04	16.23	0.00	2.436	12.64	2.12	5.0	94.9	0.1	0.56	0.41	0.67	0.81	—	10782	1447	5	0	1	0	0	logfile
✔	7Wi8	32527	2025-02-14	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.021	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.002	0.68	0.0	0.04	12.32	0.00	2.597	8.16	0.00	10.9	89.1	0.0	-2.94	1.13	0.68	0.77	—	9268	1446	4	0	4	0	0	logfile
✔	7Wi6	32526	2025-02-14	2022-01-03	3.71	4.33	—	4.2	0.009	1.02	0.0	0.06	15.69	0.01	2.025	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.003	0.60	0.0	0.04	15.60	0.00	2.531	5.24	3.21	7.7	92.3	0.0	-3.54	1.50	0.77	0.78	1.99	9696	1446	4	0	4	0	0	logfile
✔	6PZA	20530	2025-02-14	2019-07-31	3.74	3.92	—	3.9	0.008	1.06	0.0	0.06	11.13	0.01	2.252	3.22	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	3.8	0.003	0.70	0.0	0.04	15.16	0.00	2.488	9.32	4.90	5.2	94.8	0.0	0.72	1.23	0.62	0.79	1.09	9659	1441	3	0	2	0	0	logfile
✔	6ZGD	11202	2025-02-14	2020-06-18	4.1	4.30	3.99	4.2	0.006	0.62	0.0	0.05	10.93	0.01	2.137	10.94	0.61	4.6	95.4	0.0	-1.11	0.74	0.82	—	4.2	0.003	0.61	0.0	0.05	11.64	0.00	2.551	6.63	0.00	2.2	97.8	0.0	-0.52	1.01	0.70	0.81	—	10175	1440	5	0	0	0	0	logfile
✔	9CDA	45465	2025-02-14	2024-06-24	3.3	3.08	3.30	3.3	0.006	0.59	0.0	0.05	18.16	0.00	1.993	7.61	1.85	5.1	94.9	0.0	-2.65	0.60	0.87	4.03	3.3	0.004	0.60	0.0	0.05	18.58	0.00	2.546	4.79	3.09	6.4	93.6	0.0	-2.58	0.51	0.61	0.90	4.20	9855	1440	18	0	0	0	0	logfile

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