Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TEH	41186	2025-02-14	2023-07-06	2.3	2.15	2.23	2.3	0.026	0.67	0.0	0.04	22.41	0.01	2.021	2.13	0.43	1.6	98.4	0.0	1.42	0.65	0.82	4.95	2.3	0.003	0.57	0.0	0.04	19.55	0.00	2.568	3.65	1.18	1.2	98.8	0.0	1.92	0.32	0.68	0.87	4.97	9816	1108	6	0	24	214	0	logfile
✔	8oRM	17129	2025-02-11	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.77	0.01	2.606	4.77	1.62	1.1	98.7	0.2	1.62	0.21	0.70	0.82	5.76	5341	632	7	0	2	210	0	logfile
✔	8QPF	18549	2025-02-13	2023-10-01	2.53	3.55	2.56	3.3	0.005	0.84	0.0	0.05	14.75	0.01	2.257	3.31	0.75	2.3	97.5	0.3	-0.50	0.78	0.84	3.52	3.3	0.003	0.60	0.0	0.04	15.68	0.00	2.518	7.24	1.28	2.5	97.2	0.3	2.87	1.03	0.65	0.84	3.35	9085	1167	6	0	0	202	0	logfile
✔	8YBE	39117	2025-02-10	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.005	0.71	0.0	0.04	16.53	0.00	2.598	11.36	1.00	2.2	97.8	0.0	1.31	0.32	0.68	0.83	5.54	3110	370	3	0	2	197	0	logfile
✘	7XiB	33201	2025-02-12	2022-04-12	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7178	815	8	24	2	196	0	logfile
✔	7UZS	26917	2025-02-14	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.53	0.0	0.04	17.89	0.00	2.443	2.22	1.25	1.2	98.8	0.0	1.38	0.33	0.64	0.87	6.39	10550	658	2	0	0	193	5183	logfile
✔	8FPG	29363	2025-02-14	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.03	16.22	0.00	2.555	3.84	1.94	3.5	96.5	0.0	4.48	0.29	0.58	0.83	3.95	10674	1348	20	0	4	187	0	logfile
✔	8P79	17522	2025-02-11	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.004	0.67	0.0	0.04	15.95	0.00	2.582	6.00	0.72	1.3	98.5	0.2	1.78	1.23	0.68	0.77	6.48	5256	630	6	0	1	180	0	logfile
✔	7V0S	26949	2025-02-14	2022-05-10	2.5	2.21	2.53	2.3	0.004	0.73	0.0	0.05	16.39	0.00	2.208	5.09	2.55	1.7	98.2	0.1	1.73	0.70	0.88	4.46	2.3	0.005	0.67	0.0	0.05	16.34	0.00	2.569	5.77	1.98	2.0	98.0	0.0	1.90	0.20	0.70	0.89	4.40	10303	1315	10	0	3	178	0	logfile
✘	6oVH	20212	2025-02-14	2019-05-07	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10895	1272	36	0	68	171	0	logfile
✔	8CSW	26973	2025-02-11	2022-05-13	2.5	2.22	2.46	2.3	0.007	0.86	0.0	0.06	14.46	0.01	2.219	5.03	2.33	1.2	98.8	0.0	0.83	0.64	0.88	6.02	2.3	0.004	0.59	0.0	0.04	16.84	0.00	2.563	3.87	2.51	1.4	98.6	0.0	0.88	0.41	0.63	0.88	5.57	5332	657	2	0	0	165	0	logfile
✔	8PLZ	17754	2025-02-11	2023-06-27	1.9	1.74	1.98	1.9	0.005	0.77	0.0	0.05	16.79	0.01	2.212	4.12	0.90	1.6	98.2	0.2	0.88	0.63	0.80	5.76	1.9	0.003	0.65	0.0	0.04	17.07	0.00	2.579	4.31	0.72	1.5	98.4	0.2	1.67	0.35	0.62	0.80	5.42	5271	630	7	0	2	164	0	logfile
✔	8P6Y	17511	2025-02-11	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.003	0.60	0.0	0.04	16.90	0.00	2.163	3.82	0.72	0.8	99.0	0.2	2.00	0.74	0.68	0.85	6.15	5266	630	7	0	3	158	0	logfile
✔	7ZZ6	15036	2025-02-12	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.005	0.64	0.0	0.04	17.01	0.00	2.055	5.29	1.39	2.8	97.2	0.0	1.05	0.24	0.93	0.92	4.78	8257	1017	6	0	6	157	0	logfile
✔	7P92	13258	2025-02-14	2021-07-23	2.7	2.17	2.57	2.3	0.003	0.56	1.0	0.04	14.12	0.00	1.985	4.69	0.18	3.7	96.3	0.0	0.23	0.52	0.78	3.78	2.3	0.003	0.60	0.0	0.04	17.11	0.00	2.504	6.11	1.20	3.3	96.7	0.0	0.29	1.69	0.53	0.83	3.64	10436	1322	9	0	12	157	0	logfile
✔	7EFD	31084	2025-02-11	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.005	0.80	0.0	0.05	14.80	0.00	2.552	4.70	0.27	3.4	96.0	0.6	0.76	0.56	0.80	0.84	6.40	4004	480	8	0	4	156	0	logfile
✔	7EFC	31083	2025-02-11	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.005	0.82	0.0	0.05	14.74	0.00	2.549	6.44	0.27	4.4	95.6	0.0	-0.14	0.93	0.80	0.85	6.60	4004	480	8	0	4	156	0	logfile
✔	8P70	17513	2025-02-11	2023-05-30	2.0	1.98	2.01	2.0	0.006	0.62	0.0	0.04	16.72	0.00	2.202	7.34	0.90	1.3	98.5	0.2	1.67	0.67	0.79	5.37	2.0	0.002	0.54	0.0	0.04	16.47	0.00	2.517	5.48	1.08	1.3	98.5	0.2	2.04	0.22	0.67	0.79	4.82	5282	630	7	0	2	154	0	logfile
✔	8FPS	29369	2025-02-14	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.002	0.43	0.0	0.03	16.47	0.00	2.625	2.98	1.01	0.9	99.1	0.0	4.21	0.26	0.60	0.85	3.67	10602	1338	20	0	4	152	0	logfile
✔	8P76	17519	2025-02-11	2023-05-30	2.0	1.89	2.02	2.0	0.005	0.61	0.0	0.04	16.64	0.00	2.258	6.57	0.90	1.3	98.5	0.2	1.97	0.66	0.79	5.30	2.0	0.003	0.62	0.0	0.04	16.65	0.00	2.479	5.59	0.90	1.8	98.1	0.2	1.83	0.23	0.66	0.79	5.12	5261	630	7	0	2	151	0	logfile

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