Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Xo2	33334	2025-02-10	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.003	0.45	0.0	0.05	18.75	0.00	2.634	3.05	3.49	5.8	94.2	0.0	-1.60	1.11	0.50	0.88	6.14	2550	372	6	0	0	0	0	logfile
✘	8QHP	18415	2025-02-11	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6788	820	4	0	2	0	0	logfile
✔	7SQV	25396	2025-02-11	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.004	0.52	0.0	0.04	16.26	0.00	2.516	0.68	1.46	1.9	98.1	0.0	1.56	1.99	0.77	0.90	3.74	4471	573	5	0	0	7	0	logfile
✔	7R9o	24330	2025-02-12	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.002	0.58	0.0	0.04	11.05	0.00	2.427	4.79	0.49	3.4	96.6	0.0	-0.21	3.43	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	8BFA	16018	2025-02-10	2022-10-24	3.0	3.05	3.02	3.3	0.002	0.39	0.0	0.05	13.94	0.00	2.592	6.46	0.00	0.0	100.0	0.0	-3.13	0.47	0.82	5.29	3.2	0.005	0.52	0.0	0.05	17.06	0.00	2.590	6.28	1.79	3.1	96.9	0.0	-2.30	1.02	0.52	0.88	6.77	2860	380	10	0	0	0	0	logfile
✔	7Y5H	33620	2025-02-11	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.59	0.0	0.04	15.39	0.00	2.022	5.75	2.08	1.7	98.3	0.0	1.40	1.09	0.66	0.81	1.58	4704	600	4	0	4	0	0	logfile
✔	7Xo0	33332	2025-02-10	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.004	0.45	0.0	0.05	17.18	0.00	2.579	3.05	1.94	7.2	92.8	0.0	-2.63	0.31	0.46	0.87	6.85	2550	372	6	0	0	0	0	logfile
✔	8WWK	37891	2025-02-13	2023-10-25	2.61	2.77	2.69	2.7	0.002	0.39	0.0	0.04	8.41	0.00	2.205	4.78	0.72	0.8	99.2	0.0	1.11	0.70	0.83	4.70	2.7	0.003	0.54	0.0	0.04	14.11	0.00	2.537	5.68	2.68	2.2	97.8	0.0	1.37	0.44	0.70	0.84	3.78	8967	1160	6	0	0	0	0	logfile
✔	7SAM	24952	2025-02-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.87	0.0	0.04	28.10	0.01	1.833	65.98	0.00	0.0	0.0	0.0	—	5.47	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	7RZR	24775	2025-02-10	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.004	0.35	0.0	0.03	15.17	0.00	2.631	4.44	0.35	0.0	100.0	0.0	5.95	0.32	0.82	0.83	3.37	2448	324	6	0	0	0	0	logfile
✔	7XMR	33302	2025-02-11	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.66	0.0	0.04	14.67	0.00	2.528	9.26	3.16	3.5	96.5	0.0	0.22	0.63	0.58	0.73	1.35	6611	871	5	0	0	0	0	logfile
✔	8H0P	34413	2025-02-13	2022-09-30	3.15	2.98	3.14	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.003	0.58	0.0	0.04	13.68	0.00	2.559	8.37	1.73	2.8	97.2	0.0	-0.18	0.78	0.57	0.78	2.63	8932	1137	6	0	0	0	0	logfile
✔	6HD5	0201	2025-02-14	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.83	0.0	0.04	12.18	0.00	2.340	19.65	0.00	7.4	92.5	0.1	-0.91	2.10	0.46	0.58	—	9707	1234	3	0	0	0	0	logfile
✔	8YN4	39414	2025-02-13	2024-03-10	2.97	3.15	2.94	3.1	0.002	0.40	0.0	0.04	8.47	0.00	2.276	4.44	0.33	1.1	98.9	0.0	1.49	0.67	0.81	3.52	3.1	0.005	0.64	0.0	0.04	14.59	0.00	2.475	7.13	3.51	2.3	97.7	0.0	1.53	1.24	0.68	0.82	3.29	8661	1127	6	0	2	0	0	logfile
✔	7LH3	23335	2025-02-14	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.59	0.0	0.04	10.70	0.00	2.520	8.72	0.00	3.0	97.0	0.0	1.97	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	8TZV	41770	2025-02-11	2023-08-28	2.8	3.84	3.03	3.4	0.001	0.40	0.0	0.04	7.77	0.00	2.199	6.62	0.47	1.0	99.0	0.0	0.07	0.80	0.73	1.36	3.5	0.003	0.74	0.0	0.05	14.08	0.00	2.567	11.46	1.89	2.8	97.2	0.0	-0.16	3.15	0.82	0.76	1.65	5680	696	4	0	2	0	0	logfile
✔	7RZQ	24774	2025-02-10	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.004	0.35	0.0	0.03	14.97	0.00	2.615	4.49	1.07	0.0	100.0	0.0	5.42	0.29	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile
✔	7Xo3	33335	2025-02-10	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.005	0.62	0.0	0.05	16.17	0.00	2.630	1.50	1.89	15.0	85.0	0.0	-1.91	0.39	0.50	0.85	5.72	2598	378	6	0	0	0	0	logfile
✔	8WWi	37889	2025-02-13	2023-10-25	3.43	3.62	3.55	3.6	0.002	0.41	0.0	0.04	8.18	0.00	2.085	7.35	0.95	1.7	98.3	0.0	0.41	0.60	0.67	1.27	3.6	0.003	0.72	0.0	0.04	14.25	0.00	2.306	11.78	3.38	2.7	97.3	0.0	0.63	2.31	0.61	0.69	0.56	8803	1143	5	0	0	0	0	logfile
✔	8Z7G	39813	2025-02-14	2024-04-20	3.06	2.65	3.17	1.3	0.003	0.41	0.0	0.04	9.13	0.00	2.270	4.24	2.72	2.6	97.4	0.0	-0.26	0.90	0.85	2.66	1.3	0.006	0.96	1.0	0.05	12.95	0.00	2.064	11.06	1.63	5.2	94.7	0.1	1.01	0.66	0.91	0.88	2.35	10362	1329	6	0	18	0	0	logfile

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