Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H8B	34541	2025-02-12	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.69	0.0	0.05	15.40	0.00	2.457	5.62	2.70	11.1	88.9	0.0	-1.90	0.62	0.74	0.85	3.83	8344	1027	1	0	0	0	0	logfile
✔	7SAM	24952	2025-02-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.87	0.0	0.04	28.10	0.01	1.833	65.98	0.00	0.0	0.0	0.0	—	5.47	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	8GUR	34277	2025-02-13	2022-09-13	2.84	2.28	2.92	2.0	0.002	0.50	0.0	0.04	13.74	0.00	2.131	7.78	0.00	2.1	97.9	0.0	0.31	0.75	0.75	2.85	2.0	0.003	0.61	0.0	0.04	16.38	0.00	2.534	9.25	2.06	2.7	97.3	0.0	0.49	1.09	0.77	0.79	2.42	8888	1139	6	0	1	0	0	logfile
✔	8FZQ	29637	2025-02-13	2023-01-29	4.3	3.97	4.18	4.1	0.002	0.53	0.0	0.04	15.43	0.00	1.999	8.42	0.10	2.1	97.9	0.0	1.00	0.59	0.69	—	4.1	0.003	0.60	0.0	0.04	14.79	0.00	1.991	8.10	0.00	2.1	97.9	0.0	1.11	1.01	0.63	0.76	—	9244	1133	3	0	23	0	0	logfile
✔	7UGJ	26489	2025-02-10	2022-03-24	2.81	3.45	2.86	3.2	0.002	0.50	0.0	0.04	10.72	0.00	2.285	3.79	0.00	0.7	99.3	0.0	2.01	0.54	0.89	3.90	3.2	0.003	0.61	0.0	0.04	13.91	0.00	2.265	5.06	1.90	0.7	99.3	0.0	3.15	1.81	0.51	0.86	1.45	3095	416	2	0	3	0	0	logfile
✔	7XUM	33474	2025-02-11	2022-05-19	3.8	3.49	3.48	3.7	0.002	0.57	0.0	0.04	13.82	0.00	1.938	6.52	0.00	3.7	96.3	0.0	-0.15	0.56	0.76	1.43	3.7	0.003	0.62	0.0	0.04	15.91	0.00	2.513	7.71	2.51	3.7	96.3	0.0	0.15	0.37	0.57	0.76	1.20	6155	816	2	0	1	0	0	logfile
✘	8DXQ	27773	2025-02-14	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10435	2101	7	0	0	0	0	logfile
✔	7UGX	26498	2025-02-11	2022-03-25	2.96	3.60	2.95	3.5	0.002	0.50	0.0	0.04	10.61	0.00	2.234	3.61	0.00	1.5	98.5	0.0	1.81	0.48	0.83	2.71	3.5	0.003	0.63	0.0	0.04	13.93	0.00	2.314	6.59	0.93	1.7	98.3	0.0	3.13	0.99	0.47	0.85	1.42	3108	416	2	0	3	0	0	logfile
✔	7WK7	32561	2025-02-14	2022-01-08	3.49	2.78	—	3.0	0.002	0.44	0.0	0.04	8.68	0.00	2.206	5.49	3.12	4.5	95.4	0.1	-3.90	0.77	0.76	2.02	3.1	0.003	0.74	0.0	0.04	14.95	0.00	2.510	11.02	3.83	6.1	93.9	0.0	-0.46	0.72	0.79	0.80	1.88	10206	1330	4	0	2	0	0	logfile
✔	7WL9	32578	2025-02-14	2022-01-12	3.78	3.44	—	3.5	0.002	0.49	0.0	0.04	9.09	0.00	2.201	6.64	4.27	4.6	95.3	0.1	-4.11	0.78	0.74	1.09	3.5	0.004	0.81	0.0	0.05	13.76	0.00	2.459	13.96	4.36	7.6	92.3	0.1	-0.64	0.81	0.78	0.77	1.51	10194	1327	3	0	1	0	0	logfile
✔	8AQW	15592	2025-02-11	2022-08-13	3.3	3.63	3.42	3.6	0.002	0.59	0.0	0.04	15.58	0.00	2.177	5.96	0.15	6.1	93.6	0.3	-0.74	0.61	0.76	2.62	3.6	0.004	0.69	0.0	0.04	15.55	0.00	2.462	6.68	1.02	6.4	93.4	0.3	-0.90	0.41	0.64	0.79	2.36	6457	789	4	0	3	0	0	logfile
✔	7TiL	25913	2025-02-11	2022-01-13	3.7	4.37	3.77	4.0	0.002	0.54	0.0	0.04	13.78	0.00	2.253	8.12	0.00	3.8	96.2	0.0	0.14	0.87	0.79	1.33	4.0	0.003	0.75	0.0	0.04	15.83	0.00	2.501	10.10	1.48	4.7	95.3	0.0	0.36	1.31	0.88	0.84	1.70	5815	739	2	0	0	0	0	logfile
✘	8FU6	29453	2025-02-13	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8834	1112	6	0	0	0	0	logfile
✔	7UGD	26487	2025-02-11	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.003	0.55	0.0	0.04	14.51	0.00	2.257	3.64	1.25	0.0	100.0	0.0	3.11	0.48	0.49	0.84	1.74	3079	415	2	0	3	0	0	logfile
✔	7UG0	26482	2025-02-10	2022-03-23	2.55	3.24	2.49	3.1	0.002	0.45	0.0	0.04	11.57	0.00	2.287	2.34	0.00	1.0	99.0	0.0	2.00	0.56	0.90	3.59	3.0	0.003	0.51	0.0	0.04	12.86	0.00	2.305	3.59	0.62	0.5	99.5	0.0	3.96	1.26	0.53	0.87	2.38	3126	418	2	0	3	4	0	logfile
✘	7Xo9	33341	2025-02-11	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.47	0.0	0.06	13.06	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6483	793	3	0	5	0	0	logfile
✔	7TD6	25824	2025-02-11	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.004	0.80	0.0	0.05	18.75	0.00	2.365	10.43	2.35	7.1	92.9	0.0	-3.87	1.31	0.42	0.76	3.81	5575	690	5	0	0	0	0	logfile
✔	7RQS	24635	2025-02-12	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.61	0.0	0.04	15.54	0.00	2.009	8.47	2.37	7.8	92.1	0.2	-0.98	0.57	0.70	0.69	2.22	7792	1074	2	0	1	0	0	logfile
✔	7MDW	23782	2025-02-11	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.55	0.0	0.04	14.41	0.00	2.417	8.46	1.69	7.2	92.8	0.0	-2.38	1.31	0.54	0.47	1.90	3392	435	4	0	1	0	0	logfile
✔	8F6i	28884	2025-02-14	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.003	0.65	0.0	0.04	13.88	0.00	1.992	9.29	0.09	6.0	94.0	0.0	0.18	0.46	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile

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