Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KBB	22788	2025-02-12	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.004	0.73	0.0	0.05	14.49	0.01	2.591	12.12	0.00	6.4	93.6	0.0	-0.41	1.22	0.59	0.59	—	6422	812	7	0	0	0	0	logfile
✔	8HGP	34745	2025-02-14	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	10.20	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.013	1.13	0.0	0.05	11.48	0.01	1.907	27.89	0.00	11.9	88.1	0.0	-2.69	0.91	0.69	0.68	—	9169	1172	6	0	8	0	0	logfile
✔	7SQG	25384	2025-02-11	2021-11-05	2.6	2.14	—	1.9	0.004	0.60	0.0	0.05	17.27	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.003	0.58	0.0	0.04	17.03	0.00	2.545	7.17	1.74	3.0	97.0	0.0	1.52	0.96	0.81	0.82	3.42	6630	810	6	0	12	0	0	logfile
✔	8HGo	34744	2025-02-13	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	10.13	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	2.1	0.003	0.74	0.0	0.05	14.56	0.00	2.377	9.52	1.85	6.9	93.1	0.0	-2.35	1.34	0.74	0.74	3.14	9227	1178	6	0	8	0	0	logfile
✔	7M3L	23656	2025-02-11	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.003	0.77	0.0	0.04	15.09	0.00	2.465	10.37	1.05	6.9	93.0	0.1	-0.97	3.81	0.46	0.76	1.51	6113	775	3	0	0	0	0	logfile
✔	8i88	35241	2025-02-12	2023-02-03	3.7	3.96	3.63	3.9	0.003	0.66	0.0	0.04	16.50	0.01	2.077	9.42	0.38	4.0	95.9	0.1	0.14	0.74	0.79	1.45	3.9	0.003	0.63	0.0	0.04	17.28	0.00	2.419	6.81	4.42	4.4	95.4	0.1	0.24	0.93	0.73	0.80	1.62	7287	883	3	2	0	0	0	logfile
✔	8i4B	35168	2025-02-14	2023-01-19	3.13	3.35	3.17	3.4	0.017	1.07	0.0	0.06	14.07	0.01	2.161	11.06	0.00	6.0	94.0	0.0	-2.17	0.60	0.75	2.25	3.4	0.003	0.54	0.0	0.04	15.58	0.00	2.360	5.28	1.22	1.7	98.3	0.0	1.85	1.58	0.61	0.81	1.58	9727	1218	1	0	0	0	0	logfile
✔	6WWZ	21950	2025-02-13	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.07	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	3.5	0.002	0.58	0.0	0.04	15.34	0.00	2.348	2.17	2.03	2.6	97.4	0.0	0.07	1.05	0.71	0.86	2.67	9450	1211	6	0	0	0	0	logfile
✔	7A7A	11676	2025-02-14	2020-08-27	3.08	3.57	3.16	3.5	0.009	0.75	0.0	0.05	13.72	0.01	2.167	9.13	0.00	9.0	91.0	0.0	-2.02	0.82	0.87	3.53	3.4	0.003	0.59	0.0	0.04	14.93	0.00	2.469	5.90	1.28	5.2	94.8	0.0	-0.61	0.41	0.82	0.88	2.38	10147	1324	4	0	2	0	0	logfile
✔	7X07	32919	2025-02-14	2022-02-21	3.78	4.03	—	4.0	0.013	1.66	0.0	0.08	15.38	0.01	2.145	8.39	1.97	8.1	91.2	0.7	-4.75	0.61	0.78	1.72	4.0	0.003	0.71	0.0	0.04	17.08	0.00	2.529	6.92	2.62	7.4	92.6	0.0	-2.66	1.28	0.60	0.74	0.70	10125	1266	3	0	1	0	0	logfile
✔	8GSE	34233	2025-02-12	2022-09-06	3.7	3.78	3.73	3.8	0.005	0.68	0.0	0.05	13.93	0.01	2.246	5.81	0.00	5.9	94.1	0.0	-1.94	0.43	0.85	2.71	3.8	0.005	0.62	0.0	0.04	15.94	0.00	2.583	4.71	1.33	6.8	93.2	0.0	-1.66	1.40	0.41	0.84	2.66	7474	952	5	0	0	0	0	logfile
✔	7RXH	24731	2025-02-11	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	24.73	0.00	2.211	13.92	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.005	0.55	0.0	0.04	16.72	0.00	2.069	11.76	0.56	2.7	97.3	0.0	2.47	1.52	0.60	0.91	4.30	5631	626	2	0	18	24	48	logfile
✔	7YJ1	33868	2025-02-13	2022-07-19	3.1	3.27	3.03	3.2	0.006	0.84	0.0	0.05	18.00	0.00	1.486	11.68	9.53	7.4	91.9	0.7	-3.00	0.72	0.88	2.84	3.2	0.003	0.58	0.0	0.04	17.00	0.00	2.241	3.44	2.46	4.5	95.5	0.0	-0.24	0.35	0.70	0.87	2.36	9140	1154	6	0	1	0	0	logfile
✔	5UAK	8516	2025-02-13	2016-12-19	3.87	4.12	—	4.2	0.008	1.08	0.0	0.06	13.28	0.00	2.474	0.43	0.00	4.3	95.7	0.0	-3.02	0.42	0.62	1.39	4.1	0.003	0.74	0.0	0.04	16.57	0.00	2.221	9.31	2.20	2.8	97.2	0.0	0.62	1.54	0.53	0.76	1.46	9232	1139	2	0	19	0	0	logfile
✔	6C0V	7325	2025-02-13	2018-01-02	3.4	3.67	—	3.9	0.008	1.14	0.0	0.06	13.35	0.00	1.961	0.33	0.00	4.3	95.7	0.0	-2.20	0.42	0.67	2.82	3.9	0.003	0.61	0.0	0.04	16.73	0.00	1.979	5.53	3.74	2.3	97.7	0.0	1.37	1.18	0.57	0.86	1.98	8976	1154	2	0	4	0	0	logfile
✔	7CAD	30327	2025-02-14	2020-06-08	3.41	3.74	—	3.7	0.004	0.72	0.0	0.05	13.11	0.00	2.196	11.28	0.57	7.6	92.3	0.2	-4.35	0.75	0.84	2.98	3.7	0.003	0.66	0.0	0.04	15.06	0.00	2.466	8.03	2.28	4.7	95.3	0.0	-1.30	0.42	0.73	0.84	2.07	10026	1318	4	0	0	0	0	logfile
✔	7YM8	33924	2025-02-11	2022-07-27	2.92	3.14	2.90	3.2	0.006	0.86	0.0	0.05	16.01	0.01	2.331	4.04	0.00	4.2	95.8	0.0	-3.62	0.68	0.81	3.68	3.2	0.003	0.56	0.0	0.04	16.26	0.00	2.574	5.58	2.79	3.1	96.9	0.0	0.15	0.36	0.66	0.83	3.38	4287	556	4	0	2	0	0	logfile
✔	7YWA	34151	2025-02-11	2022-08-22	3.26	2.85	3.14	3.1	0.006	0.87	0.0	0.05	18.91	0.00	1.718	11.41	0.85	3.0	97.0	0.0	0.53	0.37	0.69	2.31	3.1	0.004	0.59	0.0	0.04	19.07	0.00	1.958	9.78	2.90	2.8	97.2	0.0	0.72	0.55	0.44	0.75	2.55	5808	744	6	6	4	0	0	logfile
✔	7TAD	25771	2025-02-13	2021-12-20	3.6	3.82	—	3.8	0.003	0.70	0.0	0.04	14.28	0.01	2.126	10.39	0.00	2.8	97.2	0.0	0.68	0.62	0.64	1.42	3.8	0.003	0.64	0.0	0.04	16.22	0.00	2.436	7.16	1.56	2.7	97.3	0.0	2.95	0.51	0.64	0.66	1.12	8550	1113	8	0	4	0	0	logfile
✔	8EJF	28180	2025-02-14	2022-09-16	3.72	4.47	3.85	3.9	0.024	1.99	0.0	0.16	17.18	0.01	2.299	2.10	0.00	9.0	91.0	0.0	-1.87	0.85	0.78	2.04	4.0	0.005	0.93	0.0	0.05	14.35	0.00	2.400	14.23	1.66	12.5	86.9	0.6	-2.20	1.43	0.88	0.82	2.13	9801	1080	36	0	90	0	0	logfile

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