Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X7Q	38107	2025-02-11	2023-11-24	2.7	2.32	2.42	3.3	0.014	1.60	0.0	0.08	14.72	0.01	2.275	17.91	0.00	9.4	90.6	0.0	-4.07	0.18	0.24	0.92	3.0	0.003	0.72	0.0	0.05	17.93	0.00	2.615	10.27	5.79	4.2	95.8	0.0	-3.46	2.16	0.49	0.86	2.95	3936	550	14	0	4	0	0	logfile
✔	8iEN	35387	2025-02-12	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	7.0	0.006	1.23	1.0	0.05	15.93	0.01	1.972	12.77	2.01	6.2	93.8	0.0	-0.37	1.19	0.32	0.23	0.69	7678	991	2	0	4	0	0	logfile
✔	8XEL	38293	2025-02-14	2023-12-12	2.8	3.35	2.85	10.0	0.012	1.77	5.0	0.10	13.06	0.02	2.551	0.00	0.88	4.4	95.2	0.4	-0.52	0.19	0.01	0.17	2.9	0.004	0.79	0.0	0.05	16.62	0.01	2.224	75.69	4.40	9.0	91.0	0.0	-2.00	1.49	0.34	0.33	0.07	10119	1071	2	0	0	0	1837	logfile
✔	8B6Z	15893	2025-02-11	2022-09-27	2.9	3.26	3.37	2.8	0.002	0.51	0.0	0.04	12.07	0.00	2.286	0.59	0.27	1.4	98.6	0.0	-0.69	0.20	0.56	1.62	2.8	0.003	0.73	0.0	0.05	15.35	0.01	2.521	5.37	0.80	3.6	96.4	0.0	-0.29	1.07	0.23	0.76	1.48	3581	442	2	8	0	0	0	logfile
✔	8V85	43023	2025-02-10	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.6	0.004	0.93	0.0	0.04	13.66	0.00	2.424	28.18	0.58	5.6	94.4	0.0	-0.43	4.16	0.35	0.28	0.83	1539	197	1	0	0	0	0	logfile
✔	8ACC	15346	2025-02-10	2022-07-05	2.9	3.30	2.80	3.3	0.002	0.70	0.0	0.05	13.62	0.00	2.200	6.25	0.00	11.4	86.5	2.2	-2.46	0.20	0.81	4.38	3.3	0.003	0.61	0.0	0.04	17.16	0.00	2.505	4.76	7.24	11.4	87.8	0.9	-1.60	0.60	0.20	0.83	3.60	1779	231	2	5	0	0	0	logfile
✔	7X34	32978	2025-02-10	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.3	0.004	0.81	0.0	0.04	25.38	0.00	2.071	29.64	1.30	4.1	95.9	0.0	0.34	0.70	0.21	0.77	-0.93	2762	100	2	94	0	0	0	logfile
✔	9EoE	19852	2025-02-10	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.005	0.82	0.0	0.06	16.92	0.01	2.631	1.68	4.41	4.0	96.0	0.0	-2.35	1.27	0.27	0.84	7.38	595	77	1	0	0	0	0	logfile
✔	8Q8C	18250	2025-02-11	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.54	0.0	0.05	16.55	0.00	2.587	0.60	0.81	2.2	97.8	0.0	-1.06	1.49	0.39	0.90	7.72	6618	429	6	0	0	0	3372	logfile
✔	7TMC	25995	2025-02-11	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.004	0.82	0.0	0.06	16.96	0.01	2.414	12.17	3.70	11.0	89.0	0.0	-4.10	1.82	0.34	0.75	2.99	3426	405	6	0	12	0	0	logfile
✔	8Q27	18070	2025-02-12	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.004	0.61	0.0	0.05	17.05	0.00	2.446	0.86	0.51	4.1	95.9	0.0	-1.60	1.19	0.34	0.88	7.19	7002	453	6	0	0	0	3567	logfile
✔	8ACB	15345	2025-02-10	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.004	0.64	0.0	0.04	18.06	0.00	2.574	4.88	2.84	9.6	90.4	0.0	-0.58	1.22	0.20	0.83	3.79	1815	220	2	5	0	0	0	logfile
✔	3JBS	6478	2025-02-10	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.63	0.0	0.04	17.99	0.00	2.650	5.51	3.95	1.2	98.8	0.0	0.90	1.79	0.21	0.82	3.78	1401	175	1	0	0	0	0	logfile
✔	7FG3	31577	2025-02-13	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	3.9	0.004	0.94	0.0	0.05	16.64	0.01	2.344	20.63	2.99	13.8	85.6	0.6	-3.61	0.75	0.23	0.44	-0.04	9054	1166	2	0	0	0	0	logfile
✔	3JC2	3245	2025-02-11	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.88	0.0	0.04	17.26	0.00	2.574	12.43	1.95	7.9	91.5	0.6	-1.46	2.33	0.23	0.52	1.58	3911	482	4	0	32	0	0	logfile
✔	8Q98	18271	2025-02-12	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.53	0.0	0.05	15.06	0.00	2.501	1.14	0.51	0.9	99.1	0.0	-0.39	1.18	0.43	0.90	7.96	7032	450	6	0	0	0	3588	logfile
✔	7W6P	32331	2025-02-12	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.73	0.0	0.04	15.73	0.00	2.510	14.78	2.55	6.0	94.0	0.0	-0.82	1.94	0.32	0.26	0.39	8408	1083	6	0	1	0	0	logfile
✘	6RJU	4906	2025-02-10	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.94	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	9JSX	61786	2025-02-11	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.53	0.0	0.05	12.47	0.00	2.679	4.26	0.00	5.5	94.5	0.0	-1.31	0.77	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile
✔	9iWQ	60959	2025-02-11	2024-07-25	2.08	2.25	2.08	2.2	0.022	2.14	21.0	0.22	12.56	0.01	2.493	0.18	0.00	1.0	99.0	0.0	1.04	0.22	0.91	6.38	2.2	0.002	0.44	0.0	0.04	13.91	0.00	2.565	0.70	0.97	0.3	99.7	0.0	3.35	0.97	0.21	0.91	5.15	5683	387	1	0	0	0	2830	logfile

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