Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SRM	40735	2025-02-11	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.005	0.58	0.0	0.04	4.91	0.00	2.443	1.68	0.00	6.4	93.6	0.0	1.00	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	6PoM	20416	2025-02-11	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.006	0.94	0.0	0.05	26.62	0.01	1.998	32.05	0.00	0.0	0.0	0.0	—	1.73	0.75	0.79	—	4937	0	2	230	0	0	0	logfile
✔	8QSN	18637	2025-02-11	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.91	0.0	0.05	15.75	0.00	2.482	15.76	2.95	3.5	96.5	0.0	1.66	1.46	0.56	0.77	1.37	3579	464	1	0	0	0	0	logfile
✔	8CQR	16799	2025-02-14	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.002	0.58	0.0	0.04	15.30	0.00	2.265	13.19	2.13	3.8	96.2	0.0	1.13	1.50	0.45	0.66	0.45	9708	618	6	0	0	0	5010	logfile
✔	7ZiR	14738	2025-02-10	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.002	0.43	0.0	0.04	12.20	0.00	2.664	0.55	0.00	2.9	97.1	0.0	-3.73	1.02	0.51	0.93	7.87	2120	255	10	0	0	50	0	logfile
✔	7LQi	23487	2025-02-12	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.76	0.0	0.14	23.86	0.01	2.040	117.72	20.50	25.8	74.2	0.0	-5.05	1.41	0.64	0.85	3.63	8400	800	100	0	0	0	0	logfile
✔	8TJQ	41308	2025-02-13	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.78	0.0	0.04	24.52	0.01	1.771	21.71	0.00	0.0	0.0	0.0	—	0.17	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	7Y5W	33627	2025-02-13	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.56	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.007	0.87	0.0	0.04	29.06	0.01	2.018	22.89	5.06	2.5	97.5	0.0	1.44	0.94	0.90	0.86	0.98	8811	579	10	202	0	0	0	logfile
✘	8PoC	17788	2025-02-11	2023-07-04	4.0	4.12	3.87	4.1	0.003	0.67	0.0	0.03	14.86	0.00	2.324	6.38	0.00	3.0	97.0	0.0	2.14	0.77	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4924	616	4	0	0	0	0	logfile
✔	8SC6	40339	2025-02-11	2023-04-04	3.13	3.36	3.12	3.4	0.003	0.50	0.0	0.03	8.71	0.00	2.273	3.28	0.81	0.9	99.1	0.0	2.80	0.58	0.82	2.08	3.4	0.002	0.50	0.0	0.04	12.64	0.00	2.605	3.57	1.62	0.9	99.1	0.0	3.25	0.46	0.52	0.80	2.15	3479	447	2	0	1	0	0	logfile
✔	8SZA	40905	2025-02-11	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	15.14	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.60	0.0	0.04	15.64	0.00	2.569	8.99	1.57	0.2	99.8	0.0	3.61	0.45	0.49	0.77	1.51	4800	606	11	0	6	0	0	logfile
✔	8K1Q	36799	2025-02-11	2023-07-11	3.68	3.98	3.58	3.9	0.004	0.50	0.0	0.03	14.13	0.00	2.337	4.50	0.25	1.3	98.7	0.0	4.91	0.59	0.76	1.71	4.0	0.003	0.56	0.0	0.04	15.94	0.00	2.540	2.31	2.94	1.7	98.3	0.0	4.67	2.32	0.61	0.81	1.82	4058	484	6	0	8	4	0	logfile
✔	8SZB	40907	2025-02-11	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.77	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.57	0.0	0.04	16.71	0.00	2.377	8.44	3.33	1.5	98.5	0.0	4.22	0.94	0.51	0.79	1.48	4962	612	12	0	6	0	0	logfile
✔	6XMF	22257	2025-02-12	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	21.16	0.00	2.246	8.60	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.64	0.0	0.04	21.62	0.00	2.519	11.86	3.17	9.6	90.4	0.0	-0.64	0.46	0.71	0.76	2.88	7382	627	3	109	1	0	0	logfile
✔	8BF8	16016	2025-02-11	2022-10-24	2.8	3.14	2.80	3.1	0.003	0.47	0.0	0.03	21.43	0.00	2.203	8.73	0.93	2.7	97.3	0.0	0.92	0.64	0.76	2.97	3.1	0.003	0.50	0.0	0.03	21.40	0.00	2.511	7.74	2.79	2.1	97.9	0.0	1.14	0.88	0.59	0.74	2.89	4686	302	2	111	0	0	0	logfile
✔	8EX9	28655	2025-02-11	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.59	0.0	0.03	23.86	0.00	2.499	11.21	3.97	5.6	94.4	0.0	-0.74	0.24	0.62	0.72	4.25	4199	166	4	139	0	0	0	logfile
✔	6HD5	0201	2025-02-14	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.83	0.0	0.04	12.18	0.00	2.340	19.65	0.00	7.4	92.5	0.1	-0.91	2.10	0.46	0.58	—	9707	1234	3	0	0	0	0	logfile
✔	8FZR	29638	2025-02-11	2023-01-29	3.6	5.09	4.10	4.1	0.002	0.48	0.0	0.03	20.14	0.00	2.234	12.34	6.97	4.6	94.4	1.0	-1.87	0.52	0.24	0.50	4.2	0.003	0.68	0.0	0.04	21.91	0.00	2.493	16.23	5.62	6.8	93.0	0.2	-1.39	1.63	0.82	0.63	0.78	5711	503	3	77	1	0	0	logfile
✔	8E2H	27836	2025-02-14	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.59	0.0	0.03	15.76	0.01	2.329	5.50	2.08	1.0	99.0	0.0	2.61	0.94	0.65	0.83	4.00	10412	656	2	0	0	40	5280	logfile
✔	7XHT	33198	2025-02-12	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	21.15	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.003	0.57	0.0	0.03	21.69	0.00	2.012	4.59	2.34	2.3	97.7	0.0	0.86	0.35	0.65	0.85	4.77	7839	395	6	220	3	0	0	logfile

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