Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WKT	21708	2025-02-10	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.58	0.0	0.03	15.38	0.00	2.571	6.87	0.00	3.8	96.2	0.0	3.81	0.40	0.64	0.76	3.31	3152	424	4	0	0	0	0	logfile
✔	8Q9i	18282	2025-02-11	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.002	0.56	0.0	0.05	18.04	0.00	2.506	0.29	0.52	0.5	99.5	0.0	-1.55	4.58	0.38	0.86	7.37	3411	219	3	0	0	0	1740	logfile
✔	9CGZ	45589	2025-02-12	2024-07-01	2.69	2.42	2.56	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.65	0.0	0.05	17.79	0.00	2.481	5.13	1.56	7.7	92.3	0.0	-2.43	0.97	0.39	0.79	5.02	6822	438	6	0	0	0	3480	logfile
✔	8YBK	39120	2025-02-14	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.57	0.0	0.03	27.80	0.00	2.539	4.85	2.41	1.6	98.4	0.0	2.87	1.11	0.79	0.83	2.65	10261	708	10	228	0	0	0	logfile
✔	9H5J	51886	2025-02-10	2024-10-22	2.72	2.79	2.74	2.9	0.012	1.96	0.0	0.08	11.32	0.02	2.556	0.00	0.00	6.2	92.1	1.7	-2.25	0.43	0.87	6.55	2.9	0.004	0.78	0.0	0.05	17.38	0.01	2.595	4.02	2.91	5.5	94.5	0.0	-3.05	0.83	0.45	0.91	5.20	3300	432	6	0	0	0	0	logfile
✘	6UXA	20931	2025-02-14	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	7N9Q	24259	2025-02-12	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.006	1.47	0.0	0.00	7.94	0.00	2.432	35.79	0.00	28.5	70.6	1.0	-4.70	2.66	0.86	0.82	—	6945	2315	1	0	0	0	0	logfile
✔	7QKi	14043	2025-02-12	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.002	0.58	0.0	0.05	11.92	0.00	2.535	2.12	0.00	3.4	96.6	0.0	-1.93	1.08	0.39	0.80	4.49	7074	456	6	0	0	0	3606	logfile
✔	7QJY	14026	2025-02-11	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.004	0.71	0.0	0.05	17.05	0.00	2.476	4.55	2.53	1.8	98.2	0.0	-2.33	2.60	0.35	0.83	3.86	3444	450	6	0	0	0	0	logfile
✔	8X1i	37996	2025-02-11	2023-11-07	4.0	4.14	2.43	4.1	0.012	1.87	1.0	0.10	15.72	0.01	1.891	0.00	2.93	5.2	94.8	0.0	-2.05	0.41	0.68	—	4.1	0.003	0.68	0.0	0.04	15.07	0.00	1.809	5.93	0.98	5.7	94.3	0.0	-0.18	1.92	0.43	0.77	—	5722	369	2	0	2	0	2840	logfile
✔	8UP1	42442	2025-02-12	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.006	0.83	0.0	0.04	5.82	0.00	2.030	6.29	0.00	8.2	91.5	0.3	0.10	2.24	0.82	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	8oRE	17121	2025-02-11	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.66	0.0	0.05	17.34	0.00	2.527	1.66	2.49	6.7	93.3	0.0	-2.05	3.44	0.36	0.80	4.77	3615	231	3	0	0	0	1845	logfile
✘	6UXB	20932	2025-02-14	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	9ERN	19927	2025-02-11	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.003	0.59	0.0	0.05	15.91	0.00	2.598	2.28	0.76	1.1	98.9	0.0	-1.59	0.98	0.43	0.91	6.10	3444	450	6	0	0	0	0	logfile
✔	8URE	42491	2025-02-13	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.7	0.009	0.83	0.0	0.03	5.57	0.01	2.468	3.69	0.00	5.7	94.3	0.0	-1.13	0.68	0.82	0.83	—	8896	1792	8	0	0	0	0	logfile
✔	6CoZ	7545	2025-02-10	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.80	0.0	0.04	5.39	0.00	2.616	1.77	0.00	8.0	92.0	0.0	-2.12	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	9CZN	46422	2025-02-11	2024-08-05	2.6	2.70	2.56	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.006	0.71	0.0	0.06	19.24	0.00	2.613	8.15	1.60	5.2	94.8	0.0	-1.20	3.21	0.56	0.88	5.45	5020	680	20	0	0	0	0	logfile
✔	7ADM	11731	2025-02-14	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.003	0.62	0.0	0.04	16.99	0.00	2.288	6.27	1.83	8.3	91.7	0.0	-1.50	1.84	0.49	0.69	2.34	9726	614	1	0	0	0	4799	logfile
✔	7JV2	22491	2025-02-10	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.007	0.89	0.0	0.05	15.37	0.00	2.544	13.08	4.41	8.0	92.0	0.0	-1.54	1.27	0.71	0.78	3.88	2151	282	3	0	0	0	0	logfile
✔	7QKM	14047	2025-02-11	2021-12-17	2.66	2.80	2.61	2.7	0.010	1.89	1.0	0.11	12.52	0.01	2.548	0.00	0.00	7.2	92.8	0.0	-1.95	0.42	0.86	6.21	2.7	0.003	0.62	0.0	0.05	16.36	0.00	2.371	1.78	0.00	3.1	96.9	0.0	-1.58	1.03	0.38	0.89	5.92	5070	330	6	0	0	0	2634	logfile

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