Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PKF	17737	2025-02-11	2023-06-26	2.3673	1.91	2.30	2.6	0.013	1.73	0.0	0.12	11.30	0.01	2.355	0.12	0.00	2.3	97.7	0.0	-2.77	0.43	0.75	4.64	2.6	0.003	0.61	0.0	0.05	16.70	0.00	2.648	5.80	2.99	4.4	95.6	0.0	-2.26	1.95	0.52	0.84	4.62	4308	552	6	0	0	0	0	logfile
✔	8ooF	17012	2025-02-11	2023-04-05	2.9	1.91	3.05	2.8	0.004	0.71	0.0	0.05	13.65	0.01	2.043	2.60	0.00	2.9	97.1	0.0	-0.80	0.84	0.83	4.92	2.8	0.003	0.65	0.0	0.04	16.30	0.00	1.998	5.08	2.14	2.2	97.8	0.0	0.63	1.96	0.85	0.84	4.27	4479	556	3	0	2	0	0	logfile
✔	7P6A	13223	2025-02-11	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.004	0.67	0.0	0.05	14.23	0.00	2.613	4.40	0.43	4.7	95.3	0.0	-2.63	0.83	0.55	0.90	7.68	4166	540	10	0	0	76	0	logfile
✔	9JST	61782	2025-02-11	2024-10-01	1.79	1.95	1.31	1.9	0.012	1.74	0.0	0.08	10.67	0.01	2.662	1.17	0.00	4.9	94.7	0.4	-1.74	0.44	0.90	8.24	1.9	0.003	0.57	0.0	0.05	12.46	0.00	2.554	0.23	1.85	5.3	94.7	0.0	-1.67	0.73	0.46	0.93	7.15	4304	280	8	0	0	0	2128	logfile
✔	8JT9	36637	2025-02-10	2023-06-21	2.97	1.96	2.94	3.3	0.007	0.76	0.0	0.04	15.91	0.01	2.246	5.16	0.67	0.8	99.2	0.0	2.28	0.56	0.88	2.70	3.3	0.004	0.74	0.0	0.04	15.95	0.01	2.595	5.67	3.01	1.6	98.4	0.0	2.29	0.88	0.55	0.87	2.46	2872	384	2	0	1	0	0	logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8XZi	38797	2025-02-13	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.7	0.005	0.72	0.0	0.05	14.90	0.00	2.450	5.64	1.63	3.6	96.4	0.0	1.15	1.09	0.75	0.85	3.42	9041	1149	6	0	1	0	0	logfile
✔	8P70	17513	2025-02-11	2023-05-30	2.0	1.98	2.01	2.0	0.006	0.62	0.0	0.04	16.72	0.00	2.202	7.34	0.90	1.3	98.5	0.2	1.67	0.67	0.79	5.37	2.0	0.002	0.54	0.0	0.04	16.47	0.00	2.517	5.48	1.08	1.3	98.5	0.2	2.04	0.22	0.67	0.79	4.82	5282	630	7	0	2	154	0	logfile
✔	7P6B	13224	2025-02-11	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	16.95	0.00	2.577	5.17	1.29	4.7	95.3	0.0	-2.35	0.52	0.49	0.88	6.63	4060	540	5	0	0	0	0	logfile
✔	8Q27	18070	2025-02-12	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.004	0.61	0.0	0.05	17.05	0.00	2.446	0.86	0.51	4.1	95.9	0.0	-1.60	1.19	0.34	0.88	7.19	7002	453	6	0	0	0	3567	logfile
✔	7PBW	13307	2025-02-14	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.003	0.72	0.0	0.04	14.22	0.01	2.236	6.63	0.15	0.0	100.0	0.0	4.78	0.28	0.77	0.90	7.22	9500	873	54	0	81	230	0	logfile
✔	8Q8C	18250	2025-02-11	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.54	0.0	0.05	16.55	0.00	2.587	0.60	0.81	2.2	97.8	0.0	-1.06	1.49	0.39	0.90	7.72	6618	429	6	0	0	0	3372	logfile
✔	9JSW	61785	2025-02-11	2024-10-01	1.94	1.98	1.45	2.0	0.012	1.76	0.0	0.08	11.15	0.01	2.664	2.34	0.00	5.3	94.7	0.0	-2.00	0.43	0.88	7.60	2.0	0.003	0.63	0.0	0.05	13.96	0.01	2.490	0.23	0.46	4.5	95.5	0.0	-1.91	1.48	0.45	0.90	7.25	4304	280	8	0	0	0	2128	logfile
✔	8FPG	29363	2025-02-14	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.03	16.22	0.00	2.555	3.84	1.94	3.5	96.5	0.0	4.48	0.29	0.58	0.83	3.95	10674	1348	20	0	4	187	0	logfile
✔	8Q9G	18280	2025-02-11	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.005	0.66	0.0	0.05	16.87	0.00	2.482	1.61	1.56	2.3	97.7	0.0	-2.27	1.27	0.35	0.84	6.58	6822	438	6	0	0	0	3480	logfile
✔	8FPS	29369	2025-02-14	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.002	0.43	0.0	0.03	16.47	0.00	2.625	2.98	1.01	0.9	99.1	0.0	4.21	0.26	0.60	0.85	3.67	10602	1338	20	0	4	152	0	logfile
✔	8CD0	16565	2025-02-12	2023-01-29	2.42	2.00	—	2.8	0.007	1.25	0.0	0.07	17.39	0.01	2.122	3.48	2.03	3.7	96.3	0.0	-3.15	0.67	0.70	1.80	2.8	0.003	0.65	0.0	0.04	17.52	0.00	2.347	10.50	3.25	3.4	96.6	0.0	-0.04	0.86	0.70	0.73	2.21	6860	837	5	1	1	4	0	logfile
✔	8iKL	35516	2025-02-11	2023-02-28	2.33	2.00	2.35	1.7	0.004	0.53	0.0	0.04	12.54	0.00	2.191	5.04	0.00	1.6	98.4	0.0	1.25	0.81	0.80	4.16	1.7	0.003	0.53	0.0	0.04	15.27	0.00	2.588	4.68	0.92	2.1	97.9	0.0	1.63	0.34	0.83	0.83	3.65	6942	875	4	0	0	0	0	logfile
✔	7YPG	33999	2025-02-10	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.004	0.67	0.0	0.05	17.74	0.00	2.640	9.21	6.41	8.5	91.5	0.0	-5.33	0.97	0.41	0.82	3.14	2676	354	6	0	0	0	0	logfile
✔	8UTS	42548	2025-02-14	2023-10-31	2.7	2.00	2.74	3.3	0.005	0.84	0.0	0.05	18.95	0.01	1.992	5.05	2.56	5.4	93.8	0.8	-0.21	0.62	0.77	2.51	3.2	0.005	0.72	0.0	0.05	17.76	0.01	1.896	9.32	3.50	5.7	94.2	0.1	-0.12	0.73	0.63	0.84	2.13	9748	1227	6	1	3	0	0	logfile

• ← previous
• Page 2 of 255
• next →