Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XPZ	33386	2025-02-10	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.003	0.66	0.0	0.04	14.09	0.00	2.571	5.35	2.02	4.5	95.5	0.0	-0.83	1.14	0.44	0.77	2.37	3227	402	1	0	0	0	0	logfile
✔	7XQ1	33388	2025-02-10	2022-05-06	3.4	3.32	3.36	3.5	0.010	1.05	1.0	0.06	13.48	0.01	2.320	6.82	0.58	2.8	97.2	0.0	-6.81	0.47	0.78	3.56	3.5	0.003	0.63	0.0	0.04	14.63	0.00	2.579	6.07	2.90	2.3	97.7	0.0	0.61	1.18	0.51	0.82	2.10	3302	400	2	0	2	0	0	logfile
✔	8DWi	27755	2025-02-10	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.77	0.0	0.04	16.40	0.01	2.556	10.13	2.87	6.0	94.0	0.0	-0.47	1.65	0.47	0.71	2.20	3192	424	1	0	0	0	0	logfile
✔	7ZH4	14721	2025-02-10	2022-04-05	2.49	2.65	2.46	2.6	0.005	0.63	0.0	0.04	13.90	0.00	2.231	4.63	0.00	2.3	97.7	0.0	-0.97	0.56	0.86	4.93	2.6	0.004	0.56	0.0	0.04	16.57	0.00	2.524	4.63	2.71	1.7	98.3	0.0	1.19	1.10	0.53	0.85	3.67	2957	362	5	0	2	39	0	logfile
✔	7Y14	33556	2025-02-10	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.54	1.0	0.04	15.64	0.00	2.633	7.83	1.30	4.2	95.8	0.0	3.31	1.20	0.50	0.78	2.29	2145	265	2	0	4	0	0	logfile
✔	7ZH3	14720	2025-02-10	2022-04-05	2.5	2.66	2.45	2.7	0.010	0.84	0.0	0.06	13.33	0.01	2.209	7.02	0.00	3.8	96.2	0.0	-1.40	0.59	0.87	4.43	2.7	0.003	0.51	0.0	0.04	16.42	0.00	2.562	5.80	2.41	2.3	97.7	0.0	1.30	1.12	0.55	0.85	3.67	3301	407	5	0	1	38	0	logfile
✔	7N5F	24188	2025-02-10	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.70	0.00	2.567	7.57	2.86	1.9	98.1	0.0	2.90	0.78	0.36	0.78	3.16	3037	386	2	0	1	0	0	logfile
✔	7N5G	24189	2025-02-10	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.8	0.004	0.58	0.0	0.04	16.22	0.00	2.381	3.41	3.58	1.4	98.6	0.0	3.23	0.57	0.39	0.81	3.11	2926	371	2	0	1	0	0	logfile
✔	8DLY	27520	2025-02-10	2022-07-08	3.0	3.63	2.92	3.6	0.005	0.94	0.0	0.06	12.41	0.01	2.317	1.86	0.37	3.5	96.5	0.0	-1.46	0.63	0.81	3.36	3.6	0.004	0.77	0.0	0.05	15.77	0.00	2.525	10.53	4.12	2.9	97.1	0.0	-1.25	1.22	0.62	0.82	3.53	2483	314	3	0	1	0	0	logfile
✔	7E23	30950	2025-02-10	2021-02-04	3.3	3.62	—	3.6	0.004	0.83	0.0	0.05	14.52	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.003	0.75	0.0	0.05	16.35	0.01	2.484	10.29	1.78	15.0	85.0	0.0	-3.06	1.15	0.71	0.79	1.70	3133	403	4	0	1	0	0	logfile
✔	7WX4	32876	2025-02-10	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.54	0.0	0.04	17.67	0.00	2.448	4.97	5.48	5.2	94.8	0.0	0.20	0.46	0.45	0.82	0.06	1992	260	2	0	0	0	0	logfile
✔	7XH8	33191	2025-02-10	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.004	0.89	0.0	0.05	15.27	0.00	2.518	15.25	2.92	6.0	94.0	0.0	-0.63	1.98	0.67	0.73	1.36	3161	404	3	0	0	0	0	logfile
✔	6CoZ	7545	2025-02-10	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.80	0.0	0.04	5.39	0.00	2.616	1.77	0.00	8.0	92.0	0.0	-2.12	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	7ZSD	14930	2025-02-10	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	17.98	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.67	0.0	0.05	16.05	0.00	2.505	8.62	3.59	7.4	92.6	0.0	-0.46	0.39	0.39	0.78	1.17	2120	261	3	0	2	0	0	logfile
✔	6X2Z	22014	2025-02-10	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.69	0.0	0.04	16.14	0.00	2.165	8.19	2.55	3.6	96.4	0.0	0.63	0.96	0.43	0.87	2.21	3205	420	2	0	3	0	0	logfile
✔	8CTK	26993	2025-02-10	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.69	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	3.9	0.003	0.62	0.0	0.04	15.28	0.00	2.459	7.93	3.80	3.2	96.8	0.0	-0.58	1.10	0.52	0.72	0.86	3042	376	2	0	0	0	0	logfile
✔	6RiU	4898	2025-02-10	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.62	0.0	0.03	16.17	0.00	2.443	9.36	1.97	5.1	94.9	0.0	-0.45	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	7PQG	13593	2025-02-10	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.1	0.005	1.21	1.0	0.06	15.56	0.01	2.435	30.48	2.52	6.7	93.3	0.0	-1.24	1.24	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	8FF3	29037	2025-02-10	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.47	0.0	0.05	11.47	0.00	2.698	4.58	0.00	0.7	99.3	0.0	-1.94	0.46	0.35	0.72	4.33	2190	150	6	0	0	0	1122	logfile
✔	7X34	32978	2025-02-10	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.3	0.004	0.81	0.0	0.04	25.38	0.00	2.071	29.64	1.30	4.1	95.9	0.0	0.34	0.70	0.21	0.77	-0.93	2762	100	2	94	0	0	0	logfile

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