Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6N9U	0379	2025-02-13	2018-12-04	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8822	1063	7	18	4	0	0	logfile
✔	6N9Y	0383	2025-02-11	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.69	0.0	0.04	15.28	0.00	2.534	8.59	2.29	8.2	91.8	0.0	-0.89	1.75	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✔	6NBF	0410	2025-02-14	2018-12-07	3.0	3.52	—	3.5	0.005	0.90	0.0	0.06	9.17	0.01	2.307	3.07	0.10	3.0	97.0	0.0	-1.40	0.64	0.79	3.11	3.5	0.003	0.56	0.0	0.04	13.47	0.00	2.543	4.66	1.73	2.1	97.9	0.0	1.26	1.18	0.53	0.74	2.41	9424	1148	7	0	10	0	0	logfile
✔	6NBH	0411	2025-02-14	2018-12-07	3.5	4.06	—	4.0	0.005	0.86	0.0	0.05	8.43	0.00	2.357	1.79	0.20	2.6	97.4	0.0	-1.51	0.62	0.76	1.73	4.0	0.003	0.72	0.0	0.04	15.15	0.00	2.383	8.77	3.04	3.3	96.7	0.0	0.83	1.05	0.59	0.76	1.59	9502	1159	7	0	10	0	0	logfile
✔	6NBi	0412	2025-02-13	2018-12-07	4.0	4.43	—	4.3	0.005	0.88	0.0	0.05	8.93	0.00	2.337	2.35	0.31	2.8	97.2	0.0	-1.70	0.62	0.74	—	4.3	0.003	0.84	0.0	0.04	15.79	0.00	2.406	13.06	3.70	2.3	97.7	0.0	0.12	2.52	0.64	0.77	—	9195	1141	7	0	3	0	0	logfile
✔	6ND1	0440	2025-02-13	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.005	0.76	0.0	0.05	14.80	0.00	2.370	7.68	0.00	4.4	95.6	0.0	0.04	0.63	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile
✔	6NPH	0470	2025-02-12	2019-01-17	2.9	3.11	—	3.2	0.012	1.42	0.0	0.06	18.34	0.01	2.292	5.02	4.67	7.9	92.1	0.0	-4.29	0.53	0.71	1.66	3.2	0.003	0.62	0.0	0.04	17.18	0.00	2.550	5.94	2.13	6.1	93.9	0.0	0.93	0.93	0.60	0.83	2.76	7504	944	4	0	13	0	0	logfile
✔	6NPJ	0471	2025-02-11	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	7.07	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	3.7	0.003	0.72	0.0	0.04	17.46	0.00	2.571	8.35	4.17	6.2	93.8	0.0	-2.11	0.84	0.63	0.78	2.46	6186	768	2	0	0	0	0	logfile
✔	6NPK	0472	2025-02-12	2019-01-17	3.6	3.66	—	3.6	0.004	0.82	0.0	0.05	13.02	0.01	2.320	3.89	6.13	6.6	93.4	0.0	-5.05	0.58	0.80	2.02	3.7	0.004	0.63	0.0	0.04	14.58	0.00	2.235	7.02	3.73	6.5	93.5	0.0	-0.25	1.21	0.61	0.81	2.17	7134	944	2	0	0	0	0	logfile
✔	6NPY	0476	2025-02-12	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.89	0.0	0.05	17.42	0.01	2.495	15.31	3.37	10.8	89.2	0.0	-2.37	1.09	0.78	0.71	0.20	7586	965	3	0	1	0	0	logfile
✔	6NQ1	0478	2025-02-14	2019-01-18	3.5	3.57	—	3.5	0.008	0.97	0.0	0.06	14.33	0.01	2.026	3.78	0.18	5.2	94.8	0.0	-5.53	0.59	0.82	3.36	3.5	0.004	0.71	0.0	0.04	16.17	0.01	2.397	7.76	2.27	4.8	95.2	0.0	0.82	1.28	0.58	0.83	1.78	10046	1242	2	0	0	0	0	logfile
✔	6NT5	0502	2025-02-11	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.58	0.00	2.639	6.21	0.00	2.2	97.8	0.0	1.43	1.16	0.73	0.82	—	4586	584	2	0	0	0	0	logfile
✔	6NT6	0503	2025-02-11	2019-01-28	4.0	4.22	—	4.1	0.005	0.79	0.0	0.04	11.99	0.01	2.316	3.70	0.00	3.8	96.2	0.0	-3.32	0.69	0.80	—	4.1	0.003	0.72	0.0	0.04	16.10	0.00	2.470	5.60	1.15	2.3	97.7	0.0	1.06	1.19	0.69	0.80	—	4198	556	2	0	0	0	0	logfile
✘	6NT9	0506	2025-02-14	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9906	1228	4	0	0	0	0	logfile
✘	6NUR	0520	2025-02-13	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.55	0.0	0.09	10.59	0.01	2.270	2.28	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8647	1087	5	0	2	0	0	logfile
✔	6NUS	0521	2025-02-11	2019-02-01	3.5	3.62	3.47	3.6	0.016	1.57	0.0	0.09	9.78	0.01	2.301	0.99	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.002	0.61	0.0	0.04	15.08	0.00	2.547	7.78	1.78	2.3	97.7	0.0	0.98	1.87	0.52	0.70	1.06	6632	827	3	0	2	0	0	logfile
✔	6o1V	0606	2025-02-14	2019-02-21	3.2	3.50	—	3.6	0.014	1.79	0.0	0.08	13.77	0.01	1.933	6.31	0.48	4.7	95.3	0.0	-2.71	0.46	0.70	3.04	3.6	0.003	0.59	0.0	0.04	16.29	0.00	1.992	5.04	3.00	2.1	97.9	0.0	1.45	1.23	0.59	0.82	2.37	9711	1179	3	0	28	0	0	logfile
✔	6o84	0650	2025-02-11	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.002	0.66	0.0	0.03	16.14	0.00	2.583	7.42	2.40	4.6	95.4	0.0	1.37	1.25	0.59	0.81	2.14	6224	712	4	0	118	0	0	logfile
✔	6J5A	0670	2025-02-12	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.82	0.0	0.04	13.00	0.00	2.538	10.27	0.00	7.4	92.6	0.0	-1.64	1.23	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	6J5W	0683	2025-02-13	2019-01-12	3.7	3.66	—	3.7	0.008	1.21	0.0	0.07	11.81	0.01	2.236	5.67	0.89	11.0	88.5	0.4	-4.62	0.77	0.81	2.83	3.7	0.003	0.79	0.0	0.05	15.05	0.00	2.470	9.23	2.18	8.5	91.4	0.1	-1.50	0.66	0.77	0.80	2.06	8985	1122	3	0	1	0	0	logfile

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