Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XTB	10618	2025-02-10	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.18	0.0	0.05	9.45	0.00	2.559	9.01	0.00	25.1	74.9	0.0	-6.24	2.44	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	8A06	15051	2025-02-10	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.66	0.0	0.05	17.36	0.00	2.615	4.67	10.22	4.1	95.9	0.0	-1.29	0.41	0.26	0.80	—	1185	147	1	0	0	0	0	logfile
✔	6VHL	21207	2025-02-10	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.004	0.78	0.0	0.04	16.71	0.00	2.526	4.56	2.24	10.0	90.0	0.0	-3.04	2.68	0.27	0.70	3.78	1190	158	4	0	0	0	0	logfile
✔	9Eo9	19849	2025-02-10	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.006	0.87	0.0	0.05	15.00	0.00	2.494	4.14	2.94	6.0	94.0	0.0	-2.85	1.24	0.29	0.79	3.58	1190	154	2	0	0	0	0	logfile
✔	7BC5	12139	2025-02-10	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.004	0.81	0.0	0.05	17.27	0.00	2.517	15.24	5.34	7.5	92.5	0.0	-3.13	1.30	0.24	0.59	1.31	1200	161	1	0	0	0	0	logfile
✔	6oG3	20051	2025-02-10	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.08	0.0	0.00	7.76	0.00	2.614	47.39	0.00	10.9	89.1	0.0	-1.22	2.12	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	6QJQ	4566	2025-02-10	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.81	0.0	0.05	14.47	0.00	2.639	10.37	0.00	6.7	93.3	0.0	-3.23	2.13	0.37	0.76	1.91	1218	162	6	0	0	0	0	logfile
✔	7V49	31704	2025-02-10	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.77	0.0	0.06	15.14	0.00	2.628	11.63	5.69	16.7	83.3	0.0	-5.85	1.12	0.32	0.71	5.16	1221	180	3	0	0	0	0	logfile
✔	8P36	17384	2025-02-10	2023-05-17	2.51	3.15	2.51	3.0	0.005	0.63	0.0	0.04	18.62	0.00	2.195	6.55	5.51	2.5	97.5	0.0	1.15	0.34	0.90	2.74	3.0	0.002	0.53	0.0	0.04	18.59	0.00	2.592	4.91	1.57	3.8	96.2	0.0	1.23	0.48	0.30	0.88	2.44	1223	161	2	0	2	0	0	logfile
✔	7V4C	31707	2025-02-10	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.004	0.66	0.0	0.05	17.26	0.00	2.592	4.55	9.85	12.8	87.2	0.0	-4.60	1.15	0.39	0.82	3.46	1287	186	3	0	0	0	0	logfile
✔	6QJH	4563	2025-02-10	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.60	0.0	0.05	15.37	0.00	2.600	1.49	1.96	1.8	98.2	0.0	-2.34	1.52	0.31	0.77	2.67	1302	177	3	0	0	0	0	logfile
✔	8VHV	43242	2025-02-10	2024-01-02	2.3	2.29	2.28	2.3	0.003	0.64	0.0	0.04	12.39	0.01	2.325	1.50	0.00	4.9	95.1	0.0	0.22	0.44	0.58	4.47	2.3	0.003	0.59	0.0	0.04	16.16	0.00	2.634	7.86	4.32	1.2	98.8	0.0	2.45	0.47	0.44	0.57	2.75	1335	172	1	0	0	0	0	logfile
✔	8iZZ	35878	2025-02-10	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.7	0.023	3.51	1.0	0.14	27.18	0.01	2.258	39.79	22.73	50.0	47.0	3.0	-6.99	3.53	0.29	0.49	-0.29	1342	198	22	0	0	0	0	logfile
✔	6TGP	10500	2025-02-10	2019-11-17	4.4	4.64	—	4.3	0.013	1.90	1.0	0.13	12.88	0.01	2.228	7.38	2.08	5.2	94.8	0.0	-3.36	0.45	0.85	—	4.2	0.003	0.63	0.0	0.04	12.92	0.00	2.575	5.17	0.00	2.9	97.1	0.0	1.26	2.32	0.45	0.79	—	1344	176	2	0	0	0	0	logfile
✔	8oTF	17177	2025-02-10	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.003	0.49	0.0	0.05	16.36	0.00	2.524	3.27	1.45	0.0	100.0	0.0	-0.78	0.49	0.43	0.89	6.50	1350	186	6	0	0	0	0	logfile
✔	8oVM	17223	2025-02-10	2023-04-26	3.24	3.35	1.89	3.4	0.007	0.99	0.0	0.09	11.00	0.00	2.447	9.68	0.00	2.9	97.1	0.0	-3.60	0.43	0.78	4.59	3.4	0.004	0.73	0.0	0.05	14.44	0.00	2.607	9.68	6.43	7.1	92.9	0.0	-3.28	1.51	0.45	0.80	4.49	1360	180	5	0	0	0	0	logfile
✔	6FU8	4319	2025-02-10	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.003	0.79	0.0	0.04	15.48	0.00	2.443	12.46	1.39	8.8	90.0	1.2	-2.70	4.01	0.25	0.69	1.62	1364	82	1	0	0	0	711	logfile
✔	6X0V	21985	2025-02-10	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.03	11.61	0.00	2.465	17.39	0.00	4.0	96.0	0.0	2.56	1.19	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	8WNW	37674	2025-02-10	2023-10-06	3.5	3.04	3.38	3.4	0.013	1.77	2.0	0.11	13.59	0.01	2.500	4.92	2.31	1.8	98.2	0.0	2.30	0.43	0.69	2.59	3.2	0.003	0.63	0.0	0.04	15.58	0.00	2.402	8.79	4.62	1.8	98.2	0.0	2.28	1.30	0.49	0.76	3.05	1400	173	2	0	3	1	0	logfile
✔	3JBS	6478	2025-02-10	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.63	0.0	0.04	17.99	0.00	2.650	5.51	3.95	1.2	98.8	0.0	0.90	1.79	0.21	0.82	3.78	1401	175	1	0	0	0	0	logfile

• ← previous
• Page 2 of 255
• next →