Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AZA	15757	2025-02-11	2022-09-05	3.15	4.29	3.15	3.5	0.004	0.76	1.0	0.05	17.83	0.01	2.202	26.58	0.73	4.9	95.1	0.0	-0.75	0.83	0.67	0.65	3.5	0.003	0.79	0.0	0.05	18.17	0.01	2.482	19.23	3.67	5.1	94.9	0.0	-0.58	0.68	0.84	0.71	0.68	4970	606	4	0	1	0	0	logfile
✔	7N72	24217	2025-02-13	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.35	0.0	0.06	13.13	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.003	0.85	0.0	0.04	14.18	0.00	1.667	5.40	0.80	1.8	98.2	0.0	2.10	0.43	0.68	0.84	2.90	7705	1030	2	0	11	5	0	logfile
✔	7S9E	24934	2025-02-14	2021-09-20	3.7	3.21	—	3.6	0.004	0.72	0.0	0.05	13.53	0.00	2.202	11.48	0.00	7.1	92.9	0.0	-0.36	0.60	0.81	2.60	3.6	0.003	0.64	0.0	0.04	15.54	0.00	2.433	9.46	2.61	6.2	93.8	0.0	0.82	1.18	0.62	0.82	2.51	10476	1354	4	0	2	0	0	logfile
✔	7FG2	31574	2025-02-13	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.003	0.76	0.0	0.05	14.62	0.00	2.522	13.01	0.00	12.2	87.4	0.3	-2.65	0.74	0.37	0.63	—	9342	1202	2	0	0	0	0	logfile
✔	6PCV	20308	2025-02-13	2019-06-18	3.2	2.93	3.33	3.3	0.006	0.98	0.0	0.06	14.31	0.01	2.235	6.90	0.71	4.0	96.0	0.0	-3.37	0.71	0.72	2.68	3.3	0.004	0.73	0.0	0.04	17.05	0.00	2.525	12.46	2.85	4.2	95.8	0.0	-0.33	1.23	0.72	0.74	1.98	9035	1155	3	0	0	0	0	logfile
✔	6VQT	21356	2025-02-14	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.0	0.003	0.69	0.0	0.04	16.79	0.00	0.863	6.13	3.65	3.1	96.9	0.0	2.58	1.05	0.77	0.84	1.26	9144	1168	4	0	6	0	0	logfile
✔	7N73	24218	2025-02-12	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.00	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.002	0.85	0.0	0.04	14.21	0.00	1.265	4.48	1.09	2.3	97.7	0.0	2.32	0.34	0.69	0.84	2.06	7866	1036	2	0	6	3	0	logfile
✔	6A6B	6988	2025-02-11	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.004	0.66	0.0	0.05	14.30	0.00	2.615	13.56	8.52	8.5	91.5	0.0	-3.06	2.10	0.52	0.71	2.84	5256	756	12	0	0	0	0	logfile
✔	7TUY	26135	2025-02-12	2022-02-03	2.98	3.60	—	3.4	0.005	0.87	0.0	0.05	12.82	0.01	2.202	7.13	0.26	5.6	94.4	0.0	-3.71	0.68	0.81	3.08	3.4	0.003	0.73	0.0	0.04	15.27	0.00	2.586	7.63	2.46	5.2	94.8	0.0	-0.97	1.00	0.69	0.82	2.32	7157	928	5	0	1	0	0	logfile
✔	7WXW	32882	2025-02-12	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.1	0.004	0.62	0.0	0.04	15.79	0.00	2.551	4.38	1.81	2.8	97.2	0.0	0.25	1.18	0.78	0.78	2.72	8121	1032	5	0	0	0	0	logfile
✔	7RX3	24723	2025-02-14	2021-08-21	3.3	3.49	—	3.4	0.009	1.37	0.0	0.06	22.83	0.01	2.327	6.98	0.20	7.5	92.5	0.0	-3.98	0.74	0.84	3.22	3.4	0.004	0.61	0.0	0.04	18.55	0.00	2.482	5.46	3.05	7.0	93.0	0.0	0.64	0.42	0.73	0.86	2.56	10130	1182	4	0	16	0	0	logfile
✔	7WQZ	32716	2025-02-11	2022-01-26	3.7	4.25	—	4.0	0.003	0.54	0.0	0.04	10.73	0.00	2.272	9.90	2.13	8.5	91.5	0.0	-4.46	0.81	0.74	1.55	4.1	0.003	0.81	0.0	0.05	13.90	0.00	2.383	14.66	4.74	13.8	86.2	0.0	-3.02	0.72	0.83	0.78	1.73	3974	496	4	0	9	0	0	logfile
✔	7VUG	32127	2025-02-14	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.56	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.003	0.61	0.0	0.04	15.96	0.00	2.538	9.46	3.18	5.3	94.7	0.0	-0.45	0.36	0.74	0.75	2.25	8924	1127	6	0	1	0	0	logfile
✔	7WR7	32717	2025-02-11	2022-01-26	3.1	3.81	—	3.8	0.004	0.61	0.0	0.04	10.28	0.00	2.309	10.13	3.29	9.1	90.9	0.0	-4.53	0.72	0.72	2.80	3.8	0.005	0.72	0.0	0.05	14.03	0.00	2.337	11.16	0.94	12.6	87.4	0.0	-2.96	0.70	0.72	0.75	2.50	3995	496	4	0	10	0	0	logfile
✔	8JoL	36459	2025-02-13	2023-06-07	3.0	3.98	2.98	3.4	0.009	1.46	0.0	0.07	18.20	0.01	2.214	35.79	16.43	12.3	86.8	0.8	-4.77	0.56	0.70	0.79	3.4	0.003	0.84	0.0	0.04	16.60	0.00	1.979	8.57	1.65	3.8	96.2	0.0	0.73	1.50	0.62	0.88	1.43	8513	1087	5	0	4	0	0	logfile
✔	7UM6	26598	2025-02-12	2022-04-06	2.79	2.13	2.81	1.9	0.004	0.58	0.0	0.04	11.09	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	1.9	0.004	0.62	0.0	0.04	14.19	0.00	2.534	2.70	2.42	3.6	96.4	0.0	0.64	0.38	0.83	0.83	3.58	8175	1094	6	0	1	0	0	logfile
✔	7SP8	25368	2025-02-12	2021-11-02	2.7	2.98	—	2.9	0.008	0.77	0.0	0.05	14.94	0.00	2.204	5.45	0.16	1.5	98.5	0.0	2.53	0.72	0.82	2.37	2.9	0.003	0.59	0.0	0.04	16.46	0.00	2.069	5.53	1.90	1.2	98.6	0.1	1.89	0.56	0.75	0.88	3.27	6090	742	4	0	5	0	0	logfile
✔	8DPH	27635	2025-02-12	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.56	0.0	0.04	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.60	0.0	0.04	13.92	0.00	2.547	4.57	2.32	2.6	97.4	0.0	1.62	1.04	0.78	0.77	2.27	8182	1093	6	0	3	0	0	logfile
✔	7SP9	25369	2025-02-12	2021-11-02	2.9	3.20	—	3.1	0.004	0.57	0.0	0.05	12.07	0.00	2.245	5.66	0.00	1.2	98.8	0.0	1.62	0.71	0.78	2.80	3.1	0.003	0.63	0.0	0.04	15.01	0.00	2.426	7.77	3.03	2.2	97.7	0.1	1.05	0.64	0.73	0.85	3.46	5966	737	4	0	2	0	0	logfile
✔	7KXY	23067	2025-02-13	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.007	1.08	0.0	0.06	14.97	0.01	2.500	33.13	0.10	23.1	76.8	0.1	-5.21	1.26	0.65	0.64	—	9510	1181	2	0	0	0	0	logfile

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