Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XWR	10636	2025-02-13	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	3.7	0.003	0.67	0.0	0.04	13.98	0.00	2.390	9.92	0.60	3.0	97.0	0.0	1.22	1.14	0.70	0.83	1.39	9564	1278	3	0	0	0	0	logfile
✔	6XMT	22263	2025-02-12	2020-06-30	3.3	3.96	3.42	3.7	0.004	0.61	0.0	0.04	12.44	0.00	1.814	7.30	0.00	4.5	95.5	0.0	-2.38	0.72	0.82	2.61	3.7	0.003	0.57	0.0	0.04	14.26	0.00	1.901	5.01	1.59	4.1	95.9	0.0	0.58	0.41	0.72	0.86	1.92	8324	1092	2	0	2	0	0	logfile
✔	7SB2	24961	2025-02-11	2021-09-23	3.4	3.66	3.14	3.3	0.007	0.79	0.0	0.04	14.92	0.00	2.178	23.65	0.00	8.4	91.4	0.2	-0.29	0.83	0.84	1.22	3.3	0.005	0.78	0.0	0.04	16.64	0.00	2.385	15.91	2.18	5.4	94.6	0.0	0.63	0.45	0.83	0.86	0.94	4715	598	2	0	0	0	0	logfile
✔	7YAJ	33714	2025-02-12	2022-06-28	3.16	3.97	3.22	3.6	0.005	0.95	0.0	0.05	18.80	0.01	2.150	9.01	1.66	2.6	97.4	0.0	-1.00	0.60	0.66	0.66	3.7	0.003	0.75	0.0	0.04	18.47	0.00	2.064	13.29	5.46	2.6	97.4	0.0	0.49	0.85	0.61	0.74	0.66	7649	997	3	0	2	0	0	logfile
✔	7DUR	30867	2025-02-13	2021-01-11	3.3	4.35	—	3.8	0.008	1.09	0.0	0.07	15.69	0.01	2.048	13.63	4.61	4.0	96.0	0.0	-2.47	0.63	0.67	0.58	3.8	0.004	0.78	0.0	0.04	16.82	0.00	2.525	16.96	3.89	3.9	96.1	0.0	0.13	1.01	0.65	0.75	0.69	9211	1126	6	0	7	0	0	logfile
✔	7M4R	23665	2025-02-13	2021-03-22	3.65	4.49	—	4.2	0.007	0.83	0.0	0.05	14.71	0.01	2.259	9.04	0.00	14.2	85.6	0.2	-2.94	0.74	0.66	1.90	4.2	0.003	0.64	0.0	0.04	15.59	0.00	2.525	4.37	1.28	8.0	92.0	0.0	-1.18	0.53	0.87	0.85	1.55	5092	639	3	0	0	0	0	logfile
✘	6DDE	7868	2025-02-13	2018-05-10	3.5	4.11	—	4.1	0.006	1.03	0.0	0.06	10.87	0.01	2.242	6.97	0.46	6.9	93.0	0.1	-3.56	0.72	0.74	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8489	1122	8	0	2	0	0	logfile
✔	8SBB	40303	2025-02-11	2023-04-03	3.59	4.04	3.46	3.9	0.016	1.33	0.0	0.07	15.68	0.01	2.146	19.11	3.99	14.9	85.1	0.0	-5.32	0.64	0.80	2.32	3.9	0.003	0.75	0.0	0.04	16.37	0.01	2.155	6.58	3.05	6.5	93.5	0.0	-1.09	0.85	0.65	0.81	2.03	4049	499	3	0	3	0	0	logfile
✔	7Ji3	22343	2025-02-11	2020-07-22	3.46	4.28	—	4.0	0.005	0.79	0.0	0.05	13.46	0.01	2.365	6.77	0.00	3.6	96.4	0.0	-5.13	0.64	0.72	2.89	4.0	0.004	0.73	0.0	0.04	15.20	0.00	2.578	6.68	0.80	4.1	95.9	0.0	0.25	0.74	0.68	0.84	2.23	6000	777	3	0	0	0	0	logfile
✔	6M49	30074	2025-02-10	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.05	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.83	0.0	0.04	16.37	0.00	2.525	8.62	4.59	2.2	97.8	0.0	2.01	3.42	0.48	0.73	1.33	3098	420	3	0	1	0	0	logfile
✔	7KAT	22783	2025-02-14	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.90	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.004	0.63	0.0	0.04	12.16	0.00	2.556	9.07	0.00	2.7	97.3	0.0	2.03	1.32	0.66	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	8UG7	42216	2025-02-11	2023-10-05	2.95	2.74	2.90	2.9	0.005	0.66	0.0	0.05	16.57	0.01	2.215	7.06	0.00	2.1	97.9	0.0	1.97	0.60	0.89	3.44	2.9	0.003	0.54	0.0	0.04	16.97	0.00	2.541	6.19	2.54	1.7	98.3	0.0	3.70	1.28	0.60	0.90	3.47	6242	786	2	0	0	0	0	logfile
✔	7KAP	22779	2025-02-14	2020-10-01	4.1	4.58	4.09	4.2	0.003	0.55	0.0	0.04	11.24	0.00	2.205	8.00	0.00	2.3	97.7	0.0	-1.05	0.62	0.83	—	4.2	0.003	0.60	0.0	0.04	12.23	0.00	2.481	6.74	0.09	2.4	97.6	0.0	1.83	0.64	0.63	0.85	—	10715	1342	7	0	56	0	0	logfile
✔	7KAQ	22780	2025-02-15	2020-10-01	4.0	4.57	4.07	4.2	0.003	0.52	0.0	0.04	11.53	0.00	2.158	7.51	0.00	2.3	97.7	0.0	-1.00	0.62	0.83	—	4.2	0.004	0.70	0.0	0.04	13.84	0.00	2.378	8.30	1.16	2.6	97.4	0.0	1.84	0.56	0.63	0.84	—	10753	1346	7	0	56	0	0	logfile
✘	7YPX	34017	2025-02-13	2022-08-04	3.12	4.18	3.16	3.7	0.004	0.57	0.0	0.04	10.61	0.00	2.092	12.71	0.00	3.7	96.3	0.0	-0.23	0.91	0.85	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8808	1236	6	0	0	0	0	logfile
✔	8HF2	34710	2025-02-11	2022-11-09	4.14	5.08	4.11	4.8	0.012	1.04	0.0	0.05	14.20	0.00	2.264	15.84	0.00	5.1	94.9	0.0	-4.39	0.57	0.77	—	4.7	0.003	0.73	0.0	0.03	14.18	0.00	2.506	10.21	0.00	2.7	97.3	0.0	0.94	2.66	0.52	0.80	—	4660	600	5	0	0	0	0	logfile
✔	7KAJ	22772	2025-02-14	2020-10-01	3.1	3.82	3.25	3.5	0.003	0.54	0.0	0.04	12.81	0.00	2.264	3.91	0.00	3.1	96.9	0.0	-1.18	0.67	0.85	2.16	3.5	0.002	0.57	0.0	0.04	14.62	0.00	2.573	3.77	0.81	2.2	97.8	0.0	2.28	0.39	0.65	0.85	1.69	10712	1343	7	0	56	0	0	logfile
✔	3JC2	3245	2025-02-11	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.88	0.0	0.04	17.26	0.00	2.574	12.43	1.95	7.9	91.5	0.6	-1.46	2.33	0.23	0.52	1.58	3911	482	4	0	32	0	0	logfile
✔	8R3T	18874	2025-02-11	2023-11-10	3.1	3.18	2.95	3.4	0.011	2.12	6.0	0.11	14.98	0.01	2.582	0.55	5.45	2.0	96.2	1.8	-1.86	0.37	0.73	5.38	3.4	0.004	0.70	0.0	0.05	13.95	0.00	2.515	3.87	2.24	5.8	93.9	0.3	-3.05	1.75	0.38	0.76	4.50	5438	354	6	0	0	0	2804	logfile
✔	7KH0	22872	2025-02-14	2020-10-19	2.8	3.67	—	3.3	0.005	0.76	2.0	0.05	13.35	0.00	2.171	6.31	0.57	3.1	96.9	0.0	0.17	0.76	0.88	4.01	3.3	0.003	0.66	0.0	0.04	15.94	0.00	2.225	5.70	0.94	2.0	98.0	0.0	0.97	0.97	0.74	0.86	3.25	9898	1273	8	0	1	0	0	logfile

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