Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ADS	15369	2025-02-11	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.008	0.71	0.0	0.06	16.66	0.00	2.597	11.39	4.04	3.8	96.2	0.0	-3.66	0.52	0.49	0.82	6.19	5170	750	10	0	0	0	0	logfile
✔	7QVC	14174	2025-02-10	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.7	0.004	0.70	0.0	0.06	18.08	0.00	2.569	6.92	4.50	5.3	94.7	0.0	-2.28	0.98	0.42	0.89	5.81	3255	405	3	0	0	0	0	logfile
✔	7P6E	13227	2025-02-12	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.004	0.70	0.0	0.05	12.83	0.00	2.544	7.85	2.63	4.5	95.5	0.0	-4.11	2.65	0.50	0.79	4.01	8090	1050	10	0	0	0	0	logfile
✔	8A4L	15148	2025-02-12	2022-06-12	2.68	2.73	1.77	2.8	0.004	0.65	0.0	0.05	13.43	0.00	2.385	10.11	0.00	0.0	100.0	0.0	-3.33	0.52	0.85	5.71	2.8	0.005	0.62	0.0	0.05	17.41	0.00	2.584	8.47	4.10	3.3	96.7	0.0	-3.64	1.16	0.53	0.87	5.69	7755	1125	15	0	0	0	0	logfile
✔	8BGS	16035	2025-02-11	2022-10-28	3.16	3.15	2.98	3.3	0.009	1.64	0.0	0.10	13.08	0.01	2.368	1.46	0.00	6.8	93.2	0.0	-3.72	0.43	0.86	5.04	3.3	0.003	0.68	0.0	0.05	15.23	0.00	2.614	3.54	1.73	1.2	98.8	0.0	-2.80	1.31	0.36	0.80	3.01	4018	525	7	0	0	0	0	logfile
✔	7Q67	13854	2025-02-10	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.005	1.01	0.0	0.05	18.99	0.00	2.523	21.73	10.18	18.5	81.5	0.0	-5.05	2.51	0.44	0.69	0.92	2618	363	11	0	0	0	0	logfile
✔	8A7P	15223	2025-02-11	2022-06-21	3.4	3.32	3.49	3.5	0.002	0.54	0.0	0.04	10.48	0.01	2.313	6.43	1.83	4.7	95.3	0.0	-3.55	0.44	0.77	3.05	3.5	0.007	0.87	0.0	0.06	14.95	0.01	2.481	9.41	3.05	10.6	89.4	0.0	-3.99	0.78	0.45	0.81	3.23	4320	522	6	0	0	0	0	logfile
✘	8AZT	15771	2025-02-11	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✔	8UAH	42064	2025-02-11	2023-09-21	3.3	3.50	3.24	3.5	0.005	1.03	0.0	0.05	20.84	0.01	2.182	11.87	3.90	13.0	86.4	0.7	-4.43	0.72	0.83	1.72	3.5	0.003	0.73	0.0	0.04	19.98	0.00	2.512	6.22	5.12	13.4	86.4	0.2	-3.62	0.87	0.71	0.84	1.96	3534	451	2	0	0	0	0	logfile
✔	8A7T	15225	2025-02-11	2022-06-21	3.0	2.93	3.07	3.2	0.003	0.46	0.0	0.04	8.48	0.00	2.026	5.04	0.00	2.8	97.2	0.0	-4.48	0.39	0.85	4.72	3.2	0.004	0.70	0.0	0.05	15.64	0.00	2.432	7.97	4.76	2.5	97.5	0.0	-3.90	1.17	0.42	0.88	4.17	3702	444	6	0	0	0	0	logfile
✔	8CR9	16805	2025-02-12	2023-03-08	4.2	3.61	4.06	4.0	0.013	1.97	3.0	0.10	14.42	0.02	2.568	0.46	2.87	9.6	89.0	1.4	-2.67	0.57	0.61	—	4.0	0.003	0.73	0.0	0.04	13.95	0.01	2.346	8.35	0.00	14.2	85.5	0.4	-3.17	1.05	0.57	0.58	—	8621	571	3	0	0	0	4272	logfile
✔	7oZH	13124	2025-02-11	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.003	0.66	0.0	0.05	14.81	0.00	2.569	14.21	5.90	7.7	92.3	0.0	-2.22	1.43	0.40	0.68	0.89	3890	580	10	0	0	0	0	logfile
✔	8HNV	34919	2025-02-13	2022-12-08	3.1	2.71	3.05	2.9	0.002	0.57	0.0	0.04	20.86	0.00	2.103	11.63	0.00	4.3	95.7	0.0	-0.35	0.57	0.66	1.19	2.9	0.005	0.94	0.0	0.04	21.79	0.00	2.310	12.62	2.65	7.4	92.5	0.1	-0.66	1.53	0.60	0.74	1.25	9196	832	5	128	0	0	0	logfile
✔	7YMN	33934	2025-02-11	2022-07-28	3.46	3.33	3.01	3.9	0.007	0.73	0.0	0.05	12.25	0.00	2.234	11.60	0.00	17.6	82.4	0.0	-5.43	0.38	0.81	4.13	3.5	0.004	0.63	0.0	0.05	13.83	0.01	2.607	5.52	0.25	6.3	93.7	0.0	-4.49	0.33	0.37	0.81	3.97	3468	456	6	0	0	0	0	logfile
✔	7QK2	14029	2025-02-10	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.15	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.8	0.005	0.68	0.0	0.05	17.13	0.00	2.608	3.78	4.84	2.9	97.1	0.0	-1.87	1.30	0.37	0.88	5.85	3246	426	6	0	0	0	0	logfile
✔	7QKF	14040	2025-02-11	2021-12-17	2.83	2.46	2.72	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.26	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.06	0.0	0.25	16.98	0.01	2.614	4.77	1.85	5.1	94.9	0.0	-3.47	1.40	0.40	0.86	5.61	3783	249	6	0	0	0	1926	logfile
✔	8Vi3	43247	2025-02-12	2024-01-03	2.9	3.36	3.11	3.3	0.002	0.44	0.0	0.04	12.32	0.00	2.186	4.59	0.00	1.2	98.8	0.0	2.50	0.69	0.87	5.29	3.3	0.002	0.47	0.0	0.04	14.71	0.00	2.494	3.78	0.78	1.7	98.3	0.0	2.31	0.33	0.64	0.89	4.41	7359	924	3	0	0	0	0	logfile
✔	7P6D	13226	2025-02-11	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.006	0.71	0.0	0.05	13.24	0.00	2.568	3.27	2.83	11.0	89.0	0.0	-3.19	0.50	0.48	0.83	4.42	4340	575	5	0	0	0	0	logfile
✔	8P34	17383	2025-02-10	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.47	0.0	0.05	14.27	0.00	2.698	0.69	0.00	3.3	96.7	0.0	-1.59	0.32	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	8oRF	17122	2025-02-11	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.004	0.64	0.0	0.05	16.01	0.00	2.389	3.87	2.27	4.7	95.3	0.0	-3.54	1.16	0.38	0.83	5.47	4653	303	3	0	0	0	2382	logfile

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