Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F8V	31493	2025-02-11	2021-07-02	3.3	2.62	—	3.3	0.005	0.87	0.0	0.05	14.10	0.01	2.253	7.23	0.00	4.1	95.9	0.0	-1.49	0.53	0.65	1.98	3.3	0.003	0.62	0.0	0.04	16.21	0.00	2.506	11.57	2.81	4.2	95.8	0.0	-0.66	0.41	0.53	0.68	1.37	6601	848	5	0	0	0	0	logfile
✔	6LBH	0869	2025-02-13	2019-11-14	3.7	3.79	—	3.8	0.006	0.82	0.0	0.05	13.62	0.00	2.079	18.56	0.20	7.7	92.2	0.2	-2.87	0.75	0.83	2.95	3.8	0.003	0.70	0.0	0.04	15.43	0.00	2.489	11.70	3.28	5.6	94.4	0.0	-1.01	0.53	0.73	0.81	1.74	9219	1236	6	0	0	0	0	logfile
✔	8HiQ	34826	2025-02-11	2022-11-21	3.2	3.35	3.10	3.3	0.005	0.74	0.0	0.04	17.06	0.01	2.284	14.48	0.00	3.9	96.1	0.0	1.52	0.43	0.77	2.29	3.3	0.003	0.58	0.0	0.04	16.77	0.01	2.416	10.32	1.82	4.3	95.7	0.0	1.47	1.07	0.43	0.77	2.05	3274	416	2	0	1	0	0	logfile
✔	7U9P	26404	2025-02-11	2022-03-11	3.5	3.18	3.38	3.4	0.013	1.18	0.0	0.07	10.40	0.01	2.304	2.58	0.15	11.6	88.2	0.3	-4.34	0.69	0.84	4.54	3.4	0.003	0.63	0.0	0.04	13.68	0.00	2.564	3.49	3.10	5.6	94.4	0.0	-1.91	0.97	0.68	0.83	3.17	6126	773	6	0	4	0	0	logfile
✔	7PDF	13336	2025-02-11	2021-08-05	3.8	3.91	—	3.8	0.008	0.83	0.0	0.05	14.63	0.00	1.885	16.57	0.29	10.1	89.9	0.0	-4.24	0.81	0.83	1.65	3.8	0.003	0.73	0.0	0.04	16.60	0.00	2.034	10.91	1.44	3.8	96.2	0.0	-0.78	1.06	0.80	0.80	1.33	6427	794	3	0	2	0	0	logfile
✔	6V6C	21068	2025-02-11	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.5	0.003	0.67	0.0	0.04	14.58	0.00	2.625	4.61	0.00	4.2	95.8	0.0	-0.05	2.01	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	8EFE	28081	2025-02-12	2022-09-08	3.8	4.45	3.82	3.8	0.002	0.52	0.0	0.04	14.48	0.00	1.948	8.30	0.52	3.8	96.2	0.0	1.15	0.93	0.82	1.08	3.8	0.004	0.62	0.0	0.04	16.17	0.00	1.922	9.07	1.17	4.5	95.5	0.0	0.69	0.46	0.93	0.84	1.07	7135	886	3	0	2	0	0	logfile
✔	7E3B	30978	2025-02-11	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.33	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.003	0.71	0.0	0.05	12.87	0.00	2.507	9.33	0.00	6.3	93.7	0.0	-1.16	1.19	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	7Z2E	14463	2025-02-12	2022-02-26	3.45	2.90	3.48	3.3	0.006	0.76	1.0	0.05	17.63	0.01	2.227	8.14	0.24	3.1	96.8	0.1	-0.47	0.54	0.68	2.51	3.3	0.003	0.58	0.0	0.04	18.86	0.00	2.511	9.76	1.30	2.7	97.2	0.1	-0.68	0.37	0.55	0.72	2.24	8479	945	4	36	1	0	0	logfile
✔	7X26	32959	2025-02-11	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	3.9	0.004	0.81	0.0	0.05	16.05	0.00	2.434	10.27	3.82	10.7	88.8	0.5	-2.30	1.68	0.71	0.76	2.07	4828	641	3	0	0	0	0	logfile
✘	7Z24	14457	2025-02-12	2022-02-25	3.32	2.74	3.27	3.3	0.007	1.05	2.0	0.08	18.10	0.01	2.387	7.61	2.07	2.8	97.2	0.0	-0.18	0.57	0.71	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8303	929	4	36	1	0	0	logfile
✔	7Z2H	14466	2025-02-12	2022-02-27	3.58	2.76	3.60	3.6	0.006	0.81	2.0	0.05	17.79	0.01	2.263	9.08	0.72	4.3	95.5	0.1	-0.71	0.51	0.61	1.74	2.7	0.003	0.62	0.0	0.04	18.83	0.00	2.482	10.17	2.04	4.0	95.9	0.1	-0.27	0.40	0.51	0.62	1.74	8414	937	4	36	1	0	0	logfile
✔	5YW7	6847	2025-02-13	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.43	0.01	2.246	14.02	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.71	0.0	0.04	13.05	0.00	2.545	10.28	0.00	2.7	97.3	0.0	0.75	1.45	0.71	0.79	—	8944	1140	2	0	2	0	0	logfile
✔	8GDB	29945	2025-02-12	2023-03-03	3.1	3.24	3.00	3.2	0.005	0.80	0.0	0.05	14.28	0.01	2.255	3.73	0.28	4.7	95.3	0.0	-0.50	0.74	0.84	3.99	3.2	0.002	0.52	0.0	0.04	14.69	0.00	2.596	2.71	1.94	3.9	96.1	0.0	1.11	1.12	0.76	0.87	3.02	7612	1037	6	0	1	0	0	logfile
✔	9G9W	51159	2025-02-11	2024-07-25	2.48	3.01	2.57	3.0	0.007	0.72	0.0	0.05	11.38	0.01	2.295	1.11	0.00	0.4	99.6	0.0	0.55	0.47	0.78	5.21	3.0	0.005	0.52	0.0	0.04	13.59	0.00	2.649	2.59	0.00	1.2	98.8	0.0	4.39	0.89	0.49	0.79	3.15	4089	516	4	0	9	0	0	logfile
✔	7ZH0	14716	2025-02-11	2022-04-05	3.2	3.63	3.07	3.5	0.004	0.72	0.0	0.04	13.97	0.01	2.191	14.27	0.24	6.0	94.0	0.0	1.08	0.65	0.75	3.58	3.5	0.003	0.64	0.0	0.04	16.49	0.00	2.550	11.85	4.65	5.7	94.3	0.0	1.02	0.49	0.66	0.76	2.67	3869	495	1	0	0	0	0	logfile
✔	7R8C	24315	2025-02-12	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.003	0.63	0.0	0.04	15.17	0.00	2.613	7.37	2.04	5.2	94.8	0.0	1.29	0.55	0.71	0.87	2.14	8538	1090	2	0	0	0	0	logfile
✔	7WTG	32785	2025-02-10	2022-02-04	3.8	3.93	—	3.9	0.006	1.20	0.0	0.07	14.44	0.01	2.297	4.61	0.00	9.1	90.9	0.0	-2.94	0.67	0.73	2.60	3.9	0.005	0.83	0.0	0.05	16.41	0.01	2.534	12.45	3.33	10.7	89.0	0.2	-2.59	1.22	0.70	0.76	1.92	3318	425	3	0	0	0	0	logfile
✔	7Z2D	14462	2025-02-13	2022-02-26	3.38	3.18	3.47	3.3	0.004	0.66	0.0	0.04	16.35	0.01	2.187	7.33	0.00	3.9	96.1	0.0	-0.02	0.60	0.69	2.73	3.3	0.003	0.60	0.0	0.04	17.99	0.01	2.483	8.92	1.40	5.6	94.4	0.0	-0.39	0.34	0.60	0.73	2.43	8591	959	4	36	1	0	0	logfile
✔	7AWA	11928	2025-02-11	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.19	0.00	2.425	5.08	0.69	4.9	95.1	0.0	-0.65	1.17	0.54	0.80	1.63	5310	328	1	0	0	0	2703	logfile

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