Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T2E	25611	2025-02-10	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.19	0.00	2.587	1.50	0.79	0.6	99.4	0.0	0.57	0.14	0.36	0.86	4.75	2390	312	2	0	0	0	0	logfile
✔	7WY5	32884	2025-02-12	2022-02-15	2.83	2.25	—	2.0	0.005	0.75	0.0	0.05	12.83	0.00	1.986	1.32	0.00	5.4	94.6	0.0	-0.28	0.77	0.76	3.50	2.0	0.005	0.66	0.0	0.04	15.62	0.00	2.511	4.26	1.27	4.5	95.5	0.0	0.68	0.37	0.79	0.79	2.72	8009	1013	5	0	0	0	0	logfile
✔	7S9E	24934	2025-02-14	2021-09-20	3.7	3.21	—	3.6	0.004	0.72	0.0	0.05	13.53	0.00	2.202	11.48	0.00	7.1	92.9	0.0	-0.36	0.60	0.81	2.60	3.6	0.003	0.64	0.0	0.04	15.54	0.00	2.433	9.46	2.61	6.2	93.8	0.0	0.82	1.18	0.62	0.82	2.51	10476	1354	4	0	2	0	0	logfile
✔	8B01	15775	2025-02-11	2022-09-06	3.03	3.65	3.02	3.5	0.004	0.60	0.0	0.04	13.53	0.00	2.217	2.82	0.53	2.9	97.1	0.0	2.16	0.67	0.82	2.94	3.5	0.004	0.58	0.0	0.04	15.17	0.00	2.268	2.20	2.28	2.2	97.8	0.0	2.46	0.99	0.72	0.88	2.76	5478	684	5	0	15	0	0	logfile
✔	8DMK	27542	2025-02-12	2022-07-08	3.7	4.20	3.87	4.0	0.003	0.57	0.0	0.04	14.55	0.00	1.425	12.24	0.00	6.4	93.6	0.0	-1.18	0.76	0.66	1.02	4.0	0.003	0.68	0.0	0.05	16.13	0.00	2.361	11.89	1.75	5.8	94.2	0.0	-1.89	1.09	0.79	0.74	0.96	7348	917	6	0	6	0	0	logfile
✔	7SZi	25567	2025-02-12	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.55	0.0	0.04	14.30	0.00	2.536	2.58	0.96	4.3	95.6	0.1	0.07	0.26	0.72	0.88	5.01	8089	1038	4	0	0	0	0	logfile
✔	7N73	24218	2025-02-12	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.00	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.002	0.85	0.0	0.04	14.21	0.00	1.265	4.48	1.09	2.3	97.7	0.0	2.32	0.34	0.69	0.84	2.06	7866	1036	2	0	6	3	0	logfile
✔	6A6B	6988	2025-02-11	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.004	0.66	0.0	0.05	14.30	0.00	2.615	13.56	8.52	8.5	91.5	0.0	-3.06	2.10	0.52	0.71	2.84	5256	756	12	0	0	0	0	logfile
✔	8ET6	28586	2025-02-12	2022-10-16	3.57	3.92	3.77	3.9	0.003	0.53	0.0	0.04	11.90	0.00	1.831	5.02	0.47	3.6	96.4	0.0	0.54	0.52	0.71	1.69	3.9	0.002	0.55	0.0	0.03	14.86	0.00	2.389	6.13	3.07	4.2	95.8	0.0	1.38	1.34	0.50	0.71	1.64	8092	532	2	0	2	0	4007	logfile
✔	8DPi	27636	2025-02-12	2022-07-15	3.4	2.28	3.42	2.1	0.003	0.52	0.0	0.06	11.00	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.003	0.64	0.0	0.04	14.39	0.00	2.451	6.17	3.42	3.3	96.7	0.0	1.39	0.59	0.75	0.73	2.39	8150	1093	6	0	2	0	0	logfile
✔	6Y90	10731	2025-02-14	2020-03-06	3.69	4.05	—	4.0	0.007	0.90	0.0	0.07	14.80	0.00	2.031	7.74	0.19	2.8	97.2	0.0	0.18	0.59	0.76	1.32	4.0	0.003	0.66	0.0	0.04	15.43	0.00	2.165	9.51	2.89	3.9	96.1	0.0	-0.09	0.97	0.59	0.80	1.91	9778	1218	8	0	20	0	0	logfile
✔	7WQZ	32716	2025-02-11	2022-01-26	3.7	4.25	—	4.0	0.003	0.54	0.0	0.04	10.73	0.00	2.272	9.90	2.13	8.5	91.5	0.0	-4.46	0.81	0.74	1.55	4.1	0.003	0.81	0.0	0.05	13.90	0.00	2.383	14.66	4.74	13.8	86.2	0.0	-3.02	0.72	0.83	0.78	1.73	3974	496	4	0	9	0	0	logfile
✔	7VUG	32127	2025-02-14	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.56	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.003	0.61	0.0	0.04	15.96	0.00	2.538	9.46	3.18	5.3	94.7	0.0	-0.45	0.36	0.74	0.75	2.25	8924	1127	6	0	1	0	0	logfile
✔	7WR7	32717	2025-02-11	2022-01-26	3.1	3.81	—	3.8	0.004	0.61	0.0	0.04	10.28	0.00	2.309	10.13	3.29	9.1	90.9	0.0	-4.53	0.72	0.72	2.80	3.8	0.005	0.72	0.0	0.05	14.03	0.00	2.337	11.16	0.94	12.6	87.4	0.0	-2.96	0.70	0.72	0.75	2.50	3995	496	4	0	10	0	0	logfile
✔	7SPA	25370	2025-02-12	2021-11-02	2.8	3.04	—	2.9	0.004	0.57	0.0	0.05	12.25	0.00	2.275	6.27	0.00	1.4	98.6	0.0	1.68	0.71	0.77	2.48	2.9	0.005	1.04	1.0	0.04	15.43	0.00	2.324	7.60	2.39	2.8	97.1	0.1	1.36	1.28	0.75	0.86	3.80	6017	737	4	0	3	0	0	logfile
✔	7UM6	26598	2025-02-12	2022-04-06	2.79	2.13	2.81	1.9	0.004	0.58	0.0	0.04	11.09	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	1.9	0.004	0.62	0.0	0.04	14.19	0.00	2.534	2.70	2.42	3.6	96.4	0.0	0.64	0.38	0.83	0.83	3.58	8175	1094	6	0	1	0	0	logfile
✔	7SP8	25368	2025-02-12	2021-11-02	2.7	2.98	—	2.9	0.008	0.77	0.0	0.05	14.94	0.00	2.204	5.45	0.16	1.5	98.5	0.0	2.53	0.72	0.82	2.37	2.9	0.003	0.59	0.0	0.04	16.46	0.00	2.069	5.53	1.90	1.2	98.6	0.1	1.89	0.56	0.75	0.88	3.27	6090	742	4	0	5	0	0	logfile
✔	8DPH	27635	2025-02-12	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.56	0.0	0.04	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.60	0.0	0.04	13.92	0.00	2.547	4.57	2.32	2.6	97.4	0.0	1.62	1.04	0.78	0.77	2.27	8182	1093	6	0	3	0	0	logfile
✔	7SP9	25369	2025-02-12	2021-11-02	2.9	3.20	—	3.1	0.004	0.57	0.0	0.05	12.07	0.00	2.245	5.66	0.00	1.2	98.8	0.0	1.62	0.71	0.78	2.80	3.1	0.003	0.63	0.0	0.04	15.01	0.00	2.426	7.77	3.03	2.2	97.7	0.1	1.05	0.64	0.73	0.85	3.46	5966	737	4	0	2	0	0	logfile
✔	7LH2	23334	2025-02-14	2021-01-21	3.43	4.01	—	3.9	0.003	0.56	0.0	0.04	13.02	0.00	2.030	7.06	0.18	2.7	97.3	0.0	0.96	0.66	0.82	1.96	3.9	0.004	0.60	0.0	0.04	14.72	0.00	2.587	6.64	1.68	3.8	96.2	0.0	1.72	0.78	0.68	0.86	2.10	10528	1360	4	0	4	0	0	logfile

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