Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UG4	42213	2025-02-12	2023-10-05	3.02	2.74	2.96	3.0	0.006	0.73	0.0	0.06	14.72	0.02	2.207	9.47	0.00	2.4	97.6	0.0	1.83	0.60	0.86	3.18	3.0	0.002	0.45	0.0	0.04	15.40	0.00	2.630	6.25	0.59	1.9	98.1	0.0	3.01	0.92	0.61	0.88	2.96	7802	972	2	0	0	0	0	logfile
✔	8FPG	29363	2025-02-14	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.03	16.22	0.00	2.555	3.84	1.94	3.5	96.5	0.0	4.48	0.29	0.58	0.83	3.95	10674	1348	20	0	4	187	0	logfile
✔	9HGR	52165	2025-02-10	2024-11-20	2.7	2.06	2.33	2.7	0.003	0.47	0.0	0.05	14.29	0.00	2.569	2.04	0.00	3.0	97.0	0.0	-3.44	0.27	0.76	6.46	2.7	0.002	0.45	0.0	0.05	15.99	0.00	2.647	0.00	6.38	7.5	92.5	0.0	-3.67	0.41	0.27	0.77	6.46	960	142	2	0	0	0	0	logfile
✔	7Xo2	33334	2025-02-10	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.003	0.45	0.0	0.05	18.75	0.00	2.634	3.05	3.49	5.8	94.2	0.0	-1.60	1.11	0.50	0.88	6.14	2550	372	6	0	0	0	0	logfile
✔	8CSV	26972	2025-02-11	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.002	0.46	0.0	0.04	15.58	0.00	2.548	3.83	2.33	3.3	96.5	0.2	2.33	0.56	0.56	0.88	4.24	3712	483	3	0	0	48	0	logfile
✔	7LRE	23496	2025-02-12	2021-02-16	2.76	3.85	2.75	3.2	0.003	0.44	0.0	0.04	7.41	0.00	2.301	3.48	0.22	1.6	98.4	0.0	2.20	0.80	0.83	4.37	3.2	0.002	0.46	0.0	0.04	9.77	0.00	2.632	3.17	0.66	1.6	98.2	0.2	2.36	1.11	0.82	0.89	3.60	8144	1004	4	0	2	0	0	logfile
✔	7V0M	26944	2025-02-11	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.46	0.0	0.04	18.28	0.00	2.636	5.06	2.07	4.0	96.0	0.0	2.15	0.49	0.54	0.88	4.21	3724	483	4	0	0	60	0	logfile
✔	8GG4	29994	2025-02-11	2023-03-08	3.2	3.40	3.18	3.4	0.003	0.48	0.0	0.04	13.92	0.00	2.201	2.13	0.00	2.6	97.4	0.0	1.09	0.71	0.88	3.56	3.4	0.002	0.46	0.0	0.04	15.12	0.00	2.499	2.06	1.65	1.5	98.5	0.0	1.67	0.90	0.69	0.88	2.66	6764	896	6	0	2	4	0	logfile
✔	8EL8	28224	2025-02-11	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.002	0.46	0.0	0.04	15.23	0.00	2.631	1.70	0.68	2.3	97.7	0.0	1.60	0.27	0.66	0.85	1.75	4467	597	2	0	0	0	0	logfile
✔	8WoG	37686	2025-02-12	2023-10-07	2.97	3.33	3.06	3.3	0.004	0.50	0.0	0.04	16.62	0.00	1.844	15.62	2.96	3.7	96.3	0.0	0.49	0.62	0.87	2.87	3.3	0.003	0.46	0.0	0.04	16.89	0.00	2.353	14.80	4.19	4.5	95.5	0.0	1.40	0.26	0.61	0.87	2.57	7384	929	5	0	1	1	2	logfile
✔	7RZS	24776	2025-02-10	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.004	0.46	0.0	0.04	16.05	0.00	2.487	4.26	0.35	0.0	100.0	0.0	5.18	1.19	0.79	0.82	1.13	2445	324	6	0	0	0	0	logfile
✔	8GEC	29965	2025-02-11	2023-03-06	3.5	3.88	3.67	3.8	0.003	0.47	0.0	0.04	13.97	0.00	2.247	7.87	0.43	2.3	97.7	0.0	1.35	0.71	0.81	2.38	3.8	0.003	0.46	0.0	0.04	14.39	0.00	2.383	5.66	5.18	2.2	97.8	0.0	1.43	0.23	0.69	0.80	1.98	6125	891	5	0	1	0	0	logfile
✔	8GG5	29995	2025-02-11	2023-03-08	3.2	3.42	3.22	3.4	0.004	0.52	0.0	0.04	14.02	0.00	2.292	2.43	0.00	2.8	97.2	0.0	0.36	0.66	0.87	3.91	3.4	0.002	0.46	0.0	0.04	15.44	0.00	2.516	2.35	0.90	1.6	98.4	0.0	1.41	0.30	0.69	0.87	2.77	6799	904	6	0	2	5	0	logfile
✔	8A05	15048	2025-02-10	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.002	0.46	0.0	0.05	14.53	0.00	2.627	2.02	1.20	2.2	97.8	0.0	0.38	0.20	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	8oLQ	16961	2025-02-10	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.7	0.002	0.46	0.0	0.05	14.60	0.00	2.568	3.28	2.40	6.0	94.0	0.0	-1.70	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	8GGQ	40017	2025-02-10	2023-03-08	3.4	3.52	3.32	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	3.5	0.002	0.46	0.0	0.04	13.56	0.00	2.555	1.92	2.40	0.4	99.6	0.0	3.20	0.25	0.52	0.84	2.57	2130	281	2	0	1	0	0	logfile
✔	8iRM	35679	2025-02-12	2023-03-19	2.6	2.91	2.63	2.9	0.007	0.68	0.0	0.04	13.13	0.00	2.101	7.26	0.00	3.6	96.4	0.0	0.86	0.67	0.89	4.19	2.8	0.002	0.46	0.0	0.04	14.48	0.00	2.451	20.80	0.93	3.0	97.0	0.0	2.50	1.25	0.64	0.89	3.61	8138	1080	8	2	4	2	8	logfile
✔	8XMA	38469	2025-02-11	2023-12-27	2.65	3.10	2.82	3.1	0.004	0.63	0.0	0.04	23.46	0.00	1.957	7.89	0.00	1.4	98.6	0.0	3.44	0.54	0.76	3.01	3.1	0.002	0.46	0.0	0.04	16.74	0.00	1.961	6.47	3.67	1.0	99.0	0.0	3.90	0.59	0.54	0.78	2.65	4858	601	4	0	14	0	0	logfile
✔	8GG9	29999	2025-02-12	2023-03-08	3.4	3.65	3.44	3.6	0.004	0.68	0.0	0.04	14.83	0.00	2.198	4.21	0.00	2.6	97.4	0.0	0.44	0.70	0.86	3.22	3.6	0.002	0.46	0.0	0.04	15.81	0.00	2.506	3.08	0.79	1.8	98.2	0.0	1.52	0.30	0.68	0.85	2.67	7023	973	6	0	2	0	0	logfile
✔	6X0V	21985	2025-02-10	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.03	11.61	0.00	2.465	17.39	0.00	4.0	96.0	0.0	2.56	1.19	0.40	0.75	—	1384	211	4	0	0	0	62	logfile

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