Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GGW	40023	2025-02-10	2023-03-08	3.6	3.67	3.57	3.8	0.004	0.62	0.0	0.04	12.73	0.00	2.241	5.30	0.00	1.8	98.2	0.0	2.12	0.48	0.79	1.29	3.8	0.002	0.55	0.0	0.04	15.01	0.00	2.567	2.78	2.66	1.4	98.6	0.0	2.52	0.36	0.50	0.79	1.27	2079	281	2	0	1	0	0	logfile
✔	8GGQ	40017	2025-02-10	2023-03-08	3.4	3.52	3.32	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	3.5	0.002	0.46	0.0	0.04	13.56	0.00	2.555	1.92	2.40	0.4	99.6	0.0	3.20	0.25	0.52	0.84	2.57	2130	281	2	0	1	0	0	logfile
✔	8i9G	35270	2025-02-11	2023-02-06	3.2	3.67	3.09	3.6	0.005	0.67	0.0	0.05	16.41	0.00	2.213	4.97	4.97	6.6	93.4	0.0	-3.28	0.72	0.83	2.49	3.6	0.002	0.59	0.0	0.04	16.50	0.00	2.462	3.31	2.92	4.5	95.5	0.0	-0.15	0.40	0.72	0.83	2.37	6507	778	9	0	13	0	0	logfile
✔	8GFW	29986	2025-02-11	2023-03-08	3.0	3.33	3.12	3.3	0.004	0.57	0.0	0.04	13.59	0.00	2.197	3.13	0.00	2.0	98.0	0.0	0.93	0.66	0.88	4.09	3.3	0.002	0.50	0.0	0.04	15.73	0.00	2.514	1.68	2.00	1.8	98.2	0.0	1.44	0.92	0.66	0.89	3.58	6749	900	8	0	2	5	0	logfile
✔	8GG5	29995	2025-02-11	2023-03-08	3.2	3.42	3.22	3.4	0.004	0.52	0.0	0.04	14.02	0.00	2.292	2.43	0.00	2.8	97.2	0.0	0.36	0.66	0.87	3.91	3.4	0.002	0.46	0.0	0.04	15.44	0.00	2.516	2.35	0.90	1.6	98.4	0.0	1.41	0.30	0.69	0.87	2.77	6799	904	6	0	2	5	0	logfile
✔	8Uo2	42425	2025-02-11	2023-10-19	3.6	4.02	3.83	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.47	0.0	0.04	14.61	0.00	2.502	3.19	2.20	1.5	98.5	0.0	1.96	0.93	0.65	0.81	2.99	6504	956	6	0	2	0	0	logfile
✔	8GG4	29994	2025-02-11	2023-03-08	3.2	3.40	3.18	3.4	0.003	0.48	0.0	0.04	13.92	0.00	2.201	2.13	0.00	2.6	97.4	0.0	1.09	0.71	0.88	3.56	3.4	0.002	0.46	0.0	0.04	15.12	0.00	2.499	2.06	1.65	1.5	98.5	0.0	1.67	0.90	0.69	0.88	2.66	6764	896	6	0	2	4	0	logfile
✔	8SMV	40603	2025-02-12	2023-04-26	2.74	3.28	2.72	3.2	0.004	0.65	0.0	0.04	12.72	0.00	2.162	1.85	0.00	3.0	97.0	0.0	0.53	0.76	0.85	3.47	3.2	0.002	0.55	0.0	0.04	15.89	0.00	2.434	3.57	1.94	2.5	97.5	0.0	0.81	1.30	0.74	0.88	2.61	8169	1034	6	0	1	0	0	logfile
✔	8Uo3	42426	2025-02-11	2023-10-19	3.5	3.84	3.61	3.8	0.006	0.87	0.0	0.06	14.93	0.01	2.246	6.81	0.20	3.0	97.0	0.0	0.16	0.67	0.84	2.66	3.8	0.002	0.51	0.0	0.04	14.34	0.00	2.025	3.61	1.78	2.1	97.9	0.0	0.94	0.37	0.67	0.83	2.09	6650	977	6	0	3	0	0	logfile
✔	8J87	36062	2025-02-12	2023-05-01	3.42	4.18	3.44	3.5	0.002	0.54	0.0	0.04	10.98	0.00	2.196	7.33	0.00	3.7	96.3	0.0	-0.40	0.79	0.59	0.98	3.5	0.002	0.62	0.0	0.04	13.65	0.00	2.503	8.93	1.07	4.5	95.5	0.0	0.31	1.29	0.81	0.63	0.63	7846	954	2	0	0	0	0	logfile
✔	8UNT	42416	2025-02-11	2023-10-19	3.4	3.76	3.55	3.7	0.005	0.81	0.0	0.05	14.50	0.00	2.232	5.13	0.32	1.4	98.6	0.0	1.29	0.64	0.84	2.66	3.7	0.002	0.50	0.0	0.04	15.18	0.00	2.511	2.72	2.75	1.4	98.6	0.0	1.54	0.36	0.66	0.86	2.37	6712	913	6	0	2	1	0	logfile
✔	8V4N	42974	2025-02-10	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.002	0.54	0.0	0.04	17.77	0.00	2.652	1.71	2.80	1.9	98.1	0.0	0.88	0.99	0.31	0.87	3.51	2067	263	1	0	0	0	0	logfile
✔	9B5M	44217	2025-02-13	2024-03-22	2.79	3.25	2.83	3.1	0.002	0.45	0.0	0.04	9.70	0.00	2.034	1.18	0.91	2.0	98.0	0.0	1.13	0.67	0.75	3.99	3.1	0.002	0.50	0.0	0.04	13.17	0.00	2.026	2.59	1.11	1.7	98.3	0.0	1.24	1.55	0.68	0.77	3.74	8935	1133	5	0	4	0	0	logfile
✔	8UBR	42101	2025-02-13	2023-09-24	2.7	2.07	2.73	2.6	0.006	0.83	0.0	0.06	17.61	0.00	1.887	3.81	0.10	1.8	98.2	0.0	0.76	0.61	0.83	2.22	2.6	0.002	0.50	0.0	0.04	17.91	0.00	2.028	3.55	2.17	1.4	98.6	0.0	2.44	0.80	0.61	0.84	2.66	9440	1156	2	0	9	4	0	logfile
✔	8GE1	29952	2025-02-11	2023-03-06	3.4	3.78	3.54	3.8	0.003	0.51	0.0	0.04	12.49	0.00	2.203	5.64	0.00	2.2	97.8	0.0	1.67	0.71	0.85	3.09	3.8	0.002	0.50	0.0	0.04	14.36	0.00	2.595	4.33	2.90	1.9	98.1	0.0	2.04	0.29	0.65	0.81	2.14	6464	908	5	0	1	0	0	logfile
✔	8GE4	29955	2025-02-11	2023-03-06	3.3	3.62	3.40	3.6	0.003	0.45	0.0	0.04	12.45	0.00	2.248	5.38	0.00	2.0	98.0	0.0	1.63	0.70	0.85	3.35	3.6	0.002	0.47	0.0	0.04	14.36	0.00	2.613	4.76	2.22	2.0	98.0	0.0	1.88	0.28	0.70	0.85	2.82	6646	901	6	0	1	1	0	logfile
✔	8iET	35393	2025-02-14	2023-02-15	3.5	3.56	3.44	3.6	0.006	0.88	0.0	0.06	13.90	0.01	2.207	3.18	0.45	5.9	93.9	0.2	-6.60	0.65	0.84	3.54	3.6	0.002	0.59	0.0	0.04	15.41	0.00	2.519	4.28	1.97	3.1	96.9	0.0	-1.63	0.44	0.64	0.83	2.44	10184	1306	2	0	0	0	0	logfile
✔	8VE5	43165	2025-02-10	2023-12-18	3.4	3.67	3.31	3.8	0.005	0.58	0.0	0.05	11.51	0.01	2.216	7.40	0.00	2.2	97.8	0.0	0.60	0.72	0.80	4.97	3.8	0.002	0.56	0.0	0.05	14.24	0.01	2.602	5.24	2.64	2.2	97.8	0.0	0.20	0.37	0.71	0.80	4.27	3382	467	5	0	1	0	0	logfile
✔	8UNo	42411	2025-02-11	2023-10-19	3.3	3.74	3.50	3.7	0.005	0.67	0.0	0.04	13.45	0.00	2.236	5.25	0.17	2.1	97.9	0.0	1.15	0.59	0.82	3.67	3.7	0.002	0.54	0.0	0.04	14.76	0.00	2.484	3.32	1.04	1.6	98.4	0.0	1.20	0.95	0.64	0.86	3.53	6489	894	6	0	2	0	0	logfile
✔	8GG8	29998	2025-02-11	2023-03-08	3.3	3.62	3.40	3.6	0.003	0.50	0.0	0.04	13.45	0.00	2.264	4.44	0.16	1.9	98.1	0.0	0.54	0.68	0.85	2.87	3.6	0.002	0.49	0.0	0.04	14.83	0.00	2.428	2.77	1.64	1.9	98.1	0.0	1.28	0.92	0.67	0.85	2.35	6611	906	6	0	2	0	0	logfile

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