Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QVC	4647	2025-02-13	2019-03-01	4.0	4.37	3.88	4.1	0.008	1.47	0.0	0.08	11.98	0.01	2.232	8.97	2.19	8.4	91.1	0.5	-3.90	0.67	0.81	—	4.1	0.004	1.07	0.0	0.05	14.16	0.00	2.502	16.41	2.98	6.1	93.9	0.0	0.40	1.37	0.68	0.81	—	9272	1198	2	0	0	0	0	logfile
✔	7UZU	26918	2025-02-12	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.002	0.48	0.0	0.03	17.50	0.00	2.450	2.60	0.78	4.0	96.0	0.0	2.71	0.15	0.58	0.86	5.58	7399	483	4	0	0	79	3655	logfile
✔	6X3F	22021	2025-02-13	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.003	0.64	0.0	0.04	15.89	0.00	2.532	6.00	1.75	4.1	95.9	0.0	-0.15	0.96	0.54	0.85	2.08	9366	1227	6	0	3	0	0	logfile
✔	7RPK	24617	2025-02-14	2021-08-03	2.7	2.92	2.71	2.9	0.015	1.75	1.0	0.10	14.86	0.01	1.695	0.59	0.21	3.0	97.0	0.0	0.02	0.63	0.80	4.47	2.9	0.003	0.59	0.0	0.04	14.02	0.00	2.231	4.65	1.55	2.3	97.7	0.0	2.41	1.00	0.68	0.86	3.73	10018	1104	5	0	40	42	0	logfile
✔	7WDK	32438	2025-02-13	2021-12-21	3.05	3.04	—	3.1	0.004	0.74	0.0	0.05	14.65	0.01	2.201	14.24	0.51	7.8	92.2	0.0	-1.03	0.58	0.65	2.10	3.1	0.004	0.66	0.0	0.04	16.33	0.00	2.483	9.41	2.16	7.2	92.8	0.0	-0.84	0.32	0.59	0.68	1.93	9461	1215	2	0	0	0	0	logfile
✔	7RMG	24569	2025-02-12	2021-07-27	3.0	3.53	2.91	3.4	0.004	0.76	0.0	0.05	12.65	0.01	2.290	3.72	0.14	2.7	97.3	0.0	-0.92	0.75	0.80	3.48	3.4	0.003	0.59	0.0	0.04	14.92	0.00	2.382	3.72	1.92	2.2	97.8	0.0	1.32	0.94	0.75	0.87	3.25	7316	968	7	0	1	0	0	logfile
✔	7S8M	24897	2025-02-12	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.57	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.57	0.0	0.04	14.87	0.00	2.508	5.66	2.17	3.9	96.1	0.0	1.17	0.31	0.81	0.83	3.76	8346	1102	6	0	0	0	0	logfile
✔	7Wi6	32526	2025-02-14	2022-01-03	3.71	4.33	—	4.2	0.009	1.02	0.0	0.06	15.69	0.01	2.025	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.003	0.60	0.0	0.04	15.60	0.00	2.531	5.24	3.21	7.7	92.3	0.0	-3.54	1.50	0.77	0.78	1.99	9696	1446	4	0	4	0	0	logfile
✔	8E3X	27872	2025-02-13	2022-08-17	2.3	3.02	2.29	2.8	0.003	0.58	0.0	0.04	13.02	0.00	2.239	5.84	0.00	2.1	97.9	0.0	1.49	0.70	0.82	3.16	2.8	0.004	0.57	0.0	0.04	15.38	0.00	2.443	4.70	0.42	2.1	97.9	0.0	1.71	1.73	0.75	0.89	3.64	8979	1140	8	0	0	11	0	logfile
✔	7W88	32353	2025-02-12	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.003	0.73	0.0	0.04	17.58	0.01	2.446	11.71	6.68	15.1	84.9	0.0	-2.98	0.51	0.69	0.69	1.67	7138	896	1	0	0	0	0	logfile
✔	8E9X	27967	2025-02-12	2022-08-27	2.7	2.10	2.72	1.9	0.005	0.55	0.0	0.04	12.41	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.003	0.55	0.0	0.04	14.99	0.00	2.591	5.85	2.41	3.5	96.5	0.0	0.79	0.34	0.80	0.82	3.67	8380	1109	6	0	1	0	0	logfile
✔	6QVD	4649	2025-02-13	2019-03-01	4.34	5.50	4.28	6.0	0.010	1.81	8.0	0.10	12.96	0.01	2.193	12.88	3.61	9.6	90.1	0.3	-4.01	0.68	0.75	—	5.3	0.003	0.87	0.0	0.05	12.28	0.00	2.427	14.86	0.00	7.7	92.1	0.2	-0.50	1.40	0.67	0.71	—	9212	1192	2	0	0	0	0	logfile
✔	7VDC	31913	2025-02-14	2021-09-06	3.28	2.77	3.31	2.7	0.002	0.52	0.0	0.04	14.50	0.01	2.066	9.92	0.09	3.0	97.0	0.0	0.15	0.63	0.73	1.31	2.7	0.003	0.57	0.0	0.04	16.39	0.00	2.596	10.21	1.62	4.3	95.7	0.0	0.56	0.33	0.63	0.76	1.33	10472	1372	4	0	0	0	0	logfile
✔	8HBE	34623	2025-02-13	2022-10-28	3.2	3.29	—	3.4	0.007	0.73	0.0	0.05	15.14	0.00	2.217	8.96	0.00	3.5	96.5	0.0	-0.20	0.65	0.79	2.27	3.4	0.003	0.58	0.0	0.04	15.78	0.00	2.609	6.91	1.42	2.6	97.4	0.0	0.93	1.07	0.65	0.80	2.02	8610	1114	3	0	1	0	0	logfile
✔	6So5	10266	2025-02-13	2019-08-29	4.2	4.36	—	4.2	0.005	0.82	0.0	0.04	14.99	0.01	1.973	23.55	0.00	10.2	89.8	0.0	-4.60	0.68	0.79	—	4.2	0.003	0.83	0.0	0.05	14.69	0.01	2.348	14.61	0.00	6.9	93.1	0.0	-0.63	1.21	0.67	0.78	—	8737	1097	7	0	1	0	0	logfile
✔	7V0Y	26953	2025-02-11	2022-05-11	3.0	2.81	2.91	2.9	0.003	0.63	0.0	0.04	19.40	0.00	2.203	5.27	1.46	1.5	98.5	0.0	0.80	0.62	0.85	3.45	2.9	0.003	0.58	0.0	0.04	19.69	0.00	2.574	6.84	3.12	1.8	98.2	0.0	1.01	0.35	0.61	0.86	3.26	4454	558	3	0	0	1	0	logfile
✔	7ViH	32009	2025-02-13	2021-09-26	2.98	3.27	—	3.2	0.006	0.80	2.0	0.16	14.00	0.01	2.205	10.49	0.61	2.8	97.1	0.1	0.70	0.63	0.83	3.87	3.2	0.003	0.56	0.0	0.04	15.76	0.00	2.469	6.50	2.56	2.6	97.4	0.0	1.08	1.90	0.60	0.83	3.40	8938	1136	6	0	1	0	0	logfile
✔	6UUN	20883	2025-02-13	2019-10-30	3.0	3.16	2.93	3.2	0.005	0.73	0.0	0.05	11.92	0.00	2.226	8.93	0.45	3.6	96.4	0.0	-1.59	0.63	0.81	3.14	3.2	0.003	0.57	0.0	0.04	15.64	0.00	2.485	5.48	3.07	2.2	97.8	0.0	0.46	0.53	0.68	0.86	2.89	8980	1202	7	0	0	0	0	logfile
✔	7Ki0	22882	2025-02-13	2020-10-22	2.5	2.66	2.41	2.6	0.007	0.87	0.0	0.06	13.74	0.00	2.218	7.79	0.10	3.0	97.0	0.0	-0.60	0.66	0.85	4.49	2.6	0.002	0.52	0.0	0.04	16.06	0.00	2.599	3.42	1.43	2.2	97.8	0.0	1.63	0.98	0.68	0.89	3.78	9242	1143	12	0	1	79	0	logfile
✔	8EH5	28135	2025-02-11	2022-09-13	3.36	3.60	3.32	3.6	0.023	1.81	1.0	0.09	10.68	0.01	2.236	2.69	0.50	3.9	95.5	0.6	0.43	0.69	0.76	3.22	3.6	0.003	0.69	0.0	0.05	15.23	0.00	2.498	10.85	2.34	7.0	92.9	0.1	0.04	0.90	0.67	0.76	2.61	5503	704	7	0	0	0	0	logfile

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