Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DTT	47165	2025-02-12	2024-10-01	3.6	3.95	3.74	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.8	0.002	0.64	0.0	0.04	20.55	0.00	2.375	12.45	2.17	5.8	94.1	0.1	-1.32	1.02	0.55	0.42	0.68	8274	850	3	67	2	0	0	logfile
✔	8CTG	26989	2025-02-11	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.98	0.0	0.04	7.47	0.01	2.306	7.41	3.45	15.6	84.1	0.3	-3.14	2.04	0.60	0.43	1.36	5100	1006	4	0	1	0	0	logfile
✔	7FG3	31577	2025-02-13	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	3.9	0.004	0.94	0.0	0.05	16.64	0.01	2.344	20.63	2.99	13.8	85.6	0.6	-3.61	0.75	0.23	0.44	-0.04	9054	1166	2	0	0	0	0	logfile
✔	8FEL	29032	2025-02-13	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.56	0.0	0.04	13.04	0.00	2.425	9.44	0.00	3.8	96.2	0.0	0.17	1.71	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	7JGF	22325	2025-02-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.47	0.0	0.04	13.32	0.00	2.404	44.58	0.41	4.8	95.2	0.0	0.96	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	1oED	1044	2025-02-11	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.06	0.0	0.05	16.10	0.01	2.547	22.89	1.91	2.3	97.7	0.0	1.50	3.42	0.64	0.46	—	4926	636	5	0	0	0	0	logfile
✔	8T53	41042	2025-02-11	2023-06-12	4.1	4.29	4.68	4.1	0.002	0.59	0.0	0.04	12.60	0.00	2.201	11.96	0.00	1.8	98.2	0.0	0.81	0.45	0.45	—	4.1	0.003	0.64	0.0	0.04	13.49	0.00	2.448	13.53	0.00	3.4	96.6	0.0	1.21	0.61	0.46	0.47	—	6660	796	2	0	0	0	0	logfile
✔	7MDW	23782	2025-02-11	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.55	0.0	0.04	14.41	0.00	2.417	8.46	1.69	7.2	92.8	0.0	-2.38	1.31	0.54	0.47	1.90	3392	435	4	0	1	0	0	logfile
✔	9iZU	61042	2025-02-12	2024-08-01	3.7	4.91	3.71	3.8	0.002	0.45	0.0	0.04	7.95	0.00	2.095	5.25	0.13	1.4	98.6	0.0	-0.47	0.51	0.15	0.72	3.9	0.004	0.83	0.0	0.05	13.67	0.01	2.546	19.17	1.70	5.6	94.4	0.0	-0.41	2.90	0.69	0.48	-0.07	7105	933	2	0	0	0	0	logfile
✔	8E4C	27888	2025-02-11	2022-08-18	4.0	3.22	3.15	3.1	0.005	0.84	2.0	0.07	16.28	0.01	2.251	7.49	1.84	6.1	93.9	0.0	-0.24	0.48	0.49	—	3.1	0.004	0.81	0.0	0.05	17.29	0.01	2.157	14.03	6.07	6.6	93.4	0.0	-0.71	1.28	0.48	0.48	—	6398	805	6	0	5	0	0	logfile
✔	8X63	38078	2025-02-10	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.004	0.76	0.0	0.04	17.21	0.01	2.595	7.89	2.03	7.6	92.4	0.0	-0.28	0.80	0.30	0.48	1.25	2252	270	2	0	1	0	0	logfile
✔	8ENR	28277	2025-02-11	2022-09-30	3.8	4.03	4.04	4.3	0.004	0.80	0.0	0.05	14.88	0.00	2.204	17.13	0.89	0.7	99.3	0.0	1.04	0.43	0.37	0.94	4.2	0.006	1.00	0.0	0.05	17.54	0.00	2.457	21.66	3.42	11.1	88.9	0.0	-3.05	2.47	0.50	0.49	2.37	6392	888	8	0	0	0	0	logfile
✔	8iZZ	35878	2025-02-10	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.7	0.023	3.51	1.0	0.14	27.18	0.01	2.258	39.79	22.73	50.0	47.0	3.0	-6.99	3.53	0.29	0.49	-0.29	1342	198	22	0	0	0	0	logfile
✔	9CHT	45601	2025-02-12	2024-07-02	3.54	3.73	3.59	3.7	0.003	0.66	0.0	0.04	14.85	0.01	2.203	16.59	0.32	9.9	90.0	0.1	-1.62	0.54	0.47	0.88	3.7	0.003	0.66	0.0	0.04	16.54	0.00	2.448	13.45	1.16	9.5	90.4	0.1	-1.31	0.97	0.55	0.49	0.68	8445	1034	3	0	0	0	0	logfile
✔	7K8D	22728	2025-02-14	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.004	0.86	0.0	0.05	13.11	0.01	2.477	14.43	0.00	5.0	95.0	0.0	0.57	1.43	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	8B3A	15824	2025-02-10	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.080	5.89	22.0	0.41	23.11	0.05	1.857	277.96	47.62	64.0	4.7	31.3	-10.73	2.44	0.38	0.50	2.70	2010	210	60	0	60	0	0	logfile
✔	8UiP	42301	2025-02-10	2023-10-10	4.3	2.81	4.26	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	2.0	0.003	0.78	0.0	0.04	14.41	0.01	2.567	18.18	0.00	8.8	91.2	0.0	-2.36	1.60	0.41	0.50	—	2316	303	3	0	0	0	0	logfile
✔	8XRQ	38610	2025-02-10	2024-01-08	4.19	2.23	3.70	1.5	0.006	0.87	0.0	0.05	15.75	0.01	2.322	6.69	0.86	11.0	88.8	0.2	-3.50	0.50	0.46	—	1.6	0.004	0.80	0.0	0.05	13.33	0.01	2.425	12.89	0.00	13.7	86.0	0.2	-3.28	1.24	0.53	0.50	—	3210	407	3	0	0	0	0	logfile
✔	9iJ2	60613	2025-02-11	2024-06-21	3.9	4.21	4.03	4.2	0.005	1.13	0.0	0.06	22.17	0.01	2.273	9.61	0.32	9.8	90.2	0.0	-3.30	0.59	0.49	1.13	4.1	0.003	0.79	0.0	0.04	21.79	0.00	2.546	16.67	3.80	8.4	91.4	0.3	-2.19	1.26	0.60	0.51	0.94	3729	351	3	43	0	0	0	logfile
✔	8GH8	40036	2025-02-11	2023-03-09	4.3	4.08	3.85	4.0	0.004	0.79	0.0	0.05	26.60	0.01	2.219	10.05	0.23	12.7	86.8	0.5	-3.65	0.48	0.44	—	4.0	0.003	0.71	0.0	0.04	26.17	0.01	2.494	8.36	0.00	10.7	89.1	0.2	-3.66	1.06	0.53	0.51	—	6991	559	8	136	0	0	0	logfile

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