Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LV8	23529	2025-02-14	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.12	0.00	2.205	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.004	0.57	0.0	0.03	27.15	0.00	2.510	7.92	1.67	2.5	97.5	0.0	2.46	0.51	0.70	0.79	0.96	10651	764	10	242	0	0	0	logfile
✔	6NY3	8980	2025-02-14	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	22.55	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.86	0.76	0.84	1.41	4.0	0.003	0.64	0.0	0.03	22.44	0.00	2.269	7.28	3.29	14.5	85.4	0.1	-1.51	1.04	0.66	0.80	1.02	10214	794	6	164	121	0	0	logfile
✔	8G8E	29846	2025-02-10	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.39	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.004	0.63	0.0	0.03	27.94	0.00	2.436	15.44	0.00	2.9	97.1	0.0	0.35	1.83	0.91	0.84	—	2464	140	3	64	0	0	0	logfile
✔	7KDT	22829	2025-02-12	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.003	0.52	0.0	0.03	16.90	0.00	2.295	4.71	0.93	1.6	98.4	0.0	2.96	2.12	0.65	0.77	2.46	8064	505	2	0	0	0	4042	logfile
✔	7JGG	22326	2025-02-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.002	0.49	0.0	0.03	12.90	0.00	2.246	73.58	0.00	4.5	95.5	0.0	1.76	1.71	0.67	0.70	—	4210	506	1	0	0	0	28	logfile
✔	7RSQ	24677	2025-02-11	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.50	0.0	0.03	15.33	0.00	2.526	1.75	0.48	0.9	99.1	0.0	2.96	1.75	0.63	0.70	1.54	3970	246	1	0	0	0	1958	logfile
✔	8E2J	27838	2025-02-11	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.52	0.0	0.03	17.70	0.00	2.278	10.44	2.03	0.9	99.1	0.0	3.96	1.69	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile
✔	7P3F	13179	2025-02-12	2021-07-07	3.31	3.46	3.33	3.4	0.009	1.32	6.0	0.08	25.95	0.01	2.242	7.35	1.59	4.3	95.7	0.0	-1.22	0.74	0.80	2.05	3.4	0.004	0.58	0.0	0.03	25.13	0.00	2.437	7.67	1.98	4.5	95.5	0.0	0.01	0.59	0.74	0.83	2.61	6878	588	10	100	12	0	0	logfile
✔	8EXA	28656	2025-02-11	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.53	0.00	2.450	12.88	2.83	2.7	97.3	0.0	0.92	1.14	0.60	0.68	3.97	5539	341	4	139	0	0	0	logfile
✔	8FA2	28948	2025-02-10	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.002	0.43	0.0	0.03	14.51	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.78	0.35	0.76	0.79	0.45	2577	342	6	0	0	0	0	logfile
✔	6YE4	10789	2025-02-13	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	15.50	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.002	0.48	0.0	0.03	16.50	0.00	2.585	5.18	0.67	2.1	97.9	0.0	4.34	0.93	0.66	0.86	1.36	9140	1180	10	0	5	0	0	logfile
✔	7Q2Z	13786	2025-02-12	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.98	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.55	0.0	0.03	19.95	0.00	2.375	2.84	1.09	2.5	97.4	0.1	2.17	1.21	0.70	0.86	2.00	8258	902	4	46	0	0	0	logfile
✔	6o84	0650	2025-02-11	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.002	0.66	0.0	0.03	16.14	0.00	2.583	7.42	2.40	4.6	95.4	0.0	1.37	1.25	0.59	0.81	2.14	6224	712	4	0	118	0	0	logfile
✔	8i7N	35223	2025-02-13	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.002	0.47	0.0	0.03	23.04	0.00	1.947	4.30	0.00	0.0	0.0	0.0	—	0.95	0.87	0.90	—	8979	0	2	418	29	0	0	logfile
✔	8ET7	28587	2025-02-12	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.56	0.0	0.03	15.72	0.00	2.398	6.83	2.83	4.5	95.5	0.0	1.96	1.50	0.49	0.72	1.52	8111	532	3	0	3	0	4007	logfile
✔	5V6P	8637	2025-02-13	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.64	0.0	0.03	12.94	0.00	2.205	8.49	0.00	2.3	97.4	0.4	3.36	1.54	0.42	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	7UTN	26782	2025-02-12	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	23.53	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.56	0.0	0.03	23.19	0.00	2.517	6.83	0.58	1.5	98.5	0.0	0.97	0.26	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	8HF2	34710	2025-02-11	2022-11-09	4.14	5.08	4.11	4.8	0.012	1.04	0.0	0.05	14.20	0.00	2.264	15.84	0.00	5.1	94.9	0.0	-4.39	0.57	0.77	—	4.7	0.003	0.73	0.0	0.03	14.18	0.00	2.506	10.21	0.00	2.7	97.3	0.0	0.94	2.66	0.52	0.80	—	4660	600	5	0	0	0	0	logfile
✔	8CoM	16777	2025-02-14	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.54	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.004	0.59	0.0	0.03	28.52	0.00	2.500	7.79	2.93	1.7	98.3	0.0	1.99	0.91	0.70	0.83	1.30	10705	708	10	254	0	0	0	logfile
✔	7N0K	24107	2025-02-11	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.62	0.0	0.03	19.47	0.00	2.617	7.08	5.41	1.8	98.2	0.0	3.26	0.68	0.60	0.76	0.96	5154	626	2	0	0	0	0	logfile

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