Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q9M	18286	2025-02-12	2023-08-20	2.65	2.53	2.47	2.7	0.011	1.76	0.0	0.09	11.56	0.01	2.640	0.28	0.00	1.8	98.2	0.0	-1.02	0.33	0.79	6.36	2.6	0.003	0.54	0.0	0.05	16.12	0.00	2.504	0.71	1.01	0.9	99.1	0.0	-1.53	0.90	0.42	0.91	6.29	7032	450	6	0	0	0	3588	logfile
✔	8Q8W	18263	2025-02-11	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.51	0.0	0.05	15.60	0.00	2.527	0.76	1.34	0.7	99.3	0.0	-0.77	2.01	0.39	0.89	6.31	6618	429	6	0	0	0	3372	logfile
✔	8CGG	16642	2025-02-10	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.004	0.85	0.0	0.04	17.07	0.00	2.634	0.78	0.00	5.1	94.9	0.0	-4.93	0.95	0.51	0.92	7.73	2710	400	5	0	0	0	0	logfile
✔	8G6K	29772	2025-02-13	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.61	0.0	0.04	4.26	0.00	2.434	0.81	0.00	6.1	93.9	0.0	0.79	1.46	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	8Q27	18070	2025-02-12	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.004	0.61	0.0	0.05	17.05	0.00	2.446	0.86	0.51	4.1	95.9	0.0	-1.60	1.19	0.34	0.88	7.19	7002	453	6	0	0	0	3567	logfile
✔	6QPi	4614	2025-02-10	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.42	0.0	0.04	3.84	0.00	2.638	0.89	0.00	2.6	97.4	0.0	3.06	1.22	0.40	0.61	—	2288	462	2	0	0	0	0	logfile
✔	9FoR	50628	2025-02-11	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.004	0.90	0.0	0.04	16.08	0.01	2.626	0.92	1.59	7.2	92.8	0.0	-5.35	0.40	0.53	0.91	6.30	3405	490	10	0	0	0	0	logfile
✔	7R5H	14320	2025-02-12	2022-02-10	2.59	2.63	2.45	2.7	0.011	1.85	4.0	0.11	11.92	0.01	2.519	0.67	0.00	3.2	96.8	0.0	-1.94	0.42	0.84	6.46	2.7	0.002	0.55	0.0	0.05	16.15	0.00	2.618	0.94	2.40	4.9	95.1	0.0	-2.16	1.14	0.42	0.88	5.80	7440	477	6	0	0	0	3786	logfile
✔	7NCA	12264	2025-02-14	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.003	0.54	0.0	0.05	13.27	0.00	2.558	0.96	1.55	4.9	95.1	0.0	-3.04	0.75	0.69	0.85	3.74	10428	732	12	0	0	0	5376	logfile
✔	8CGH	16643	2025-02-10	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.005	0.92	0.0	0.05	17.11	0.00	2.632	0.97	0.40	5.4	94.6	0.0	-4.91	0.92	0.53	0.93	6.74	2710	400	5	0	0	0	0	logfile
✔	7R4T	14316	2025-02-12	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.003	0.53	0.0	0.05	15.88	0.00	2.517	0.99	0.76	1.4	98.6	0.0	-1.41	2.20	0.42	0.89	6.04	7074	456	6	0	0	0	3606	logfile
✔	8QCP	18331	2025-02-12	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.003	0.60	0.0	0.05	15.71	0.00	2.484	1.00	2.29	3.9	96.1	0.0	-2.10	0.96	0.35	0.86	5.41	7002	453	6	0	0	0	3567	logfile
✔	8V4Q	42975	2025-02-11	2023-11-29	2.71	2.89	2.72	2.9	0.003	0.53	0.0	0.05	13.53	0.00	2.201	1.68	0.48	1.7	98.3	0.0	0.26	0.55	0.85	3.48	2.9	0.003	0.51	0.0	0.04	16.86	0.00	2.486	1.01	2.25	1.9	98.1	0.0	0.36	0.93	0.58	0.89	3.19	5993	761	3	0	0	0	0	logfile
✔	8GGU	40021	2025-02-10	2023-03-08	3.4	3.47	3.35	3.6	0.004	0.55	0.0	0.04	13.54	0.00	2.284	4.08	0.00	1.1	98.9	0.0	1.90	0.46	0.76	1.61	3.6	0.003	0.48	0.0	0.04	15.39	0.00	2.644	1.02	4.97	0.7	99.3	0.0	2.36	0.30	0.46	0.77	1.17	2053	281	2	0	1	0	0	logfile
✔	8G14	29661	2025-02-14	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.47	0.0	0.05	15.70	0.00	2.620	1.05	0.28	2.5	97.5	0.0	0.81	0.20	0.88	0.93	5.01	10020	1336	4	0	0	0	0	logfile
✔	7VQQ	32092	2025-02-10	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.003	0.70	0.0	0.04	12.32	0.00	2.573	1.11	2.74	3.4	96.6	0.0	-4.91	0.29	0.47	0.87	4.65	1968	273	3	0	0	0	0	logfile
✔	8Q98	18271	2025-02-12	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.53	0.0	0.05	15.06	0.00	2.501	1.14	0.51	0.9	99.1	0.0	-0.39	1.18	0.43	0.90	7.96	7032	450	6	0	0	0	3588	logfile
✔	8WTV	37843	2025-02-11	2023-10-19	2.7	2.75	2.65	2.8	0.004	0.54	0.0	0.04	15.81	0.01	2.297	1.86	0.22	2.3	97.7	0.0	1.82	0.66	0.88	2.95	2.8	0.003	0.50	0.0	0.04	16.10	0.00	2.284	1.16	1.77	2.4	97.6	0.0	2.01	0.18	0.70	0.89	2.77	4325	536	2	0	6	3	0	logfile
✔	8JEX	36202	2025-02-10	2023-05-16	3.1	3.05	2.75	3.3	0.012	1.13	0.0	0.06	12.57	0.00	2.505	7.63	0.00	3.8	96.2	0.0	-4.98	0.45	0.83	2.64	3.2	0.003	0.51	0.0	0.05	13.90	0.00	2.619	1.17	3.42	1.9	98.1	0.0	-3.00	0.94	0.46	0.86	3.07	2616	330	18	0	60	0	0	logfile
✔	7W8S	32358	2025-02-12	2021-12-08	2.85	3.08	—	3.1	0.003	0.60	0.0	0.04	11.07	0.01	2.102	0.87	3.48	3.4	96.6	0.0	-4.03	0.67	0.82	4.11	3.1	0.004	0.64	0.0	0.05	14.89	0.00	2.487	1.19	2.61	3.2	96.8	0.0	-1.24	0.44	0.69	0.84	3.39	6455	788	4	0	3	0	0	logfile

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