Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KBB	22788	2025-02-12	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.004	0.73	0.0	0.05	14.49	0.01	2.591	12.12	0.00	6.4	93.6	0.0	-0.41	1.22	0.59	0.59	—	6422	812	7	0	0	0	0	logfile
✔	8BPA	16147	2025-02-14	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.77	0.0	0.04	19.09	0.00	2.032	13.60	4.06	4.0	96.0	0.0	0.29	1.21	0.69	0.66	1.23	10393	1280	6	0	7	0	0	logfile
✔	8XRQ	38610	2025-02-10	2024-01-08	4.19	2.23	3.70	1.5	0.006	0.87	0.0	0.05	15.75	0.01	2.322	6.69	0.86	11.0	88.8	0.2	-3.50	0.50	0.46	—	1.6	0.004	0.80	0.0	0.05	13.33	0.01	2.425	12.89	0.00	13.7	86.0	0.2	-3.28	1.24	0.53	0.50	—	3210	407	3	0	0	0	0	logfile
✔	7S8L	24896	2025-02-12	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.7	0.002	0.56	0.0	0.04	15.35	0.00	2.482	2.26	2.92	3.1	96.9	0.0	1.54	0.33	0.84	0.83	3.81	8177	1096	6	0	0	0	0	logfile
✔	8J97	36090	2025-02-11	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.7	0.005	0.73	0.0	0.05	14.91	0.01	2.551	9.42	2.82	6.2	93.8	0.0	-0.39	0.42	0.73	0.71	3.16	3863	544	4	0	0	0	0	logfile
✔	8GB3	29912	2025-02-11	2023-02-24	3.7	2.58	—	1.8	0.003	0.52	0.0	0.04	12.39	0.00	2.202	15.48	4.31	6.9	93.1	0.0	-0.39	0.66	0.61	0.82	1.7	0.003	0.70	0.0	0.04	14.63	0.00	2.545	12.49	3.62	6.2	93.8	0.0	-0.30	0.49	0.66	0.60	0.70	5537	735	3	0	0	0	0	logfile
✔	7N5F	24188	2025-02-10	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.70	0.00	2.567	7.57	2.86	1.9	98.1	0.0	2.90	0.78	0.36	0.78	3.16	3037	386	2	0	1	0	0	logfile
✔	8iKL	35516	2025-02-11	2023-02-28	2.33	2.00	2.35	1.7	0.004	0.53	0.0	0.04	12.54	0.00	2.191	5.04	0.00	1.6	98.4	0.0	1.25	0.81	0.80	4.16	1.7	0.003	0.53	0.0	0.04	15.27	0.00	2.588	4.68	0.92	2.1	97.9	0.0	1.63	0.34	0.83	0.83	3.65	6942	875	4	0	0	0	0	logfile
✔	8XZi	38797	2025-02-13	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.7	0.005	0.72	0.0	0.05	14.90	0.00	2.450	5.64	1.63	3.6	96.4	0.0	1.15	1.09	0.75	0.85	3.42	9041	1149	6	0	1	0	0	logfile
✔	8UMC	42375	2025-02-12	2023-10-17	2.5	2.12	2.52	1.9	0.005	0.68	0.0	0.05	17.53	0.01	2.045	9.69	1.16	2.9	96.9	0.1	-0.80	0.82	0.81	3.65	1.8	0.005	0.68	0.0	0.05	18.01	0.01	2.138	9.76	3.49	2.8	97.2	0.0	0.10	0.38	0.82	0.81	3.19	7198	890	6	0	2	0	0	logfile
✔	7WiG	32529	2025-02-13	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.57	0.0	0.04	15.37	0.00	2.518	4.78	1.84	2.4	97.6	0.0	1.49	0.34	0.80	0.80	3.27	8931	1139	6	0	1	0	0	logfile
✔	7XA3	33086	2025-02-13	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.60	0.0	0.04	13.78	0.00	2.522	6.59	2.57	2.9	97.1	0.0	1.68	1.15	0.77	0.78	2.88	9591	1220	6	0	0	0	0	logfile
✔	7RPo	24618	2025-02-14	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.98	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.003	0.72	0.0	0.04	18.38	0.00	2.043	9.33	0.00	8.5	91.5	0.0	-2.10	1.71	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7V9L	31824	2025-02-12	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	3.88	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.8	0.005	0.97	1.0	0.05	15.51	0.00	2.292	8.75	2.07	2.1	97.9	0.0	0.83	0.47	0.77	0.79	3.00	8047	1019	5	0	0	0	0	logfile
✔	9C48	45177	2025-02-13	2024-06-03	2.4	2.10	2.43	1.8	0.006	0.90	0.0	0.06	16.10	0.00	2.232	5.54	0.00	2.7	97.3	0.0	-0.49	0.77	0.84	4.87	1.8	0.004	0.59	0.0	0.05	14.82	0.00	2.070	2.58	0.83	2.8	97.2	0.0	0.10	0.36	0.79	0.87	5.40	8481	993	18	0	36	249	0	logfile
✔	8P79	17522	2025-02-11	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.004	0.67	0.0	0.04	15.95	0.00	2.582	6.00	0.72	1.3	98.5	0.2	1.78	1.23	0.68	0.77	6.48	5256	630	6	0	1	180	0	logfile
✔	8Z6X	39807	2025-02-11	2024-04-19	2.96	3.13	2.88	1.8	0.003	0.54	0.0	0.05	9.21	0.00	2.186	4.00	3.07	7.2	92.6	0.2	-2.58	0.75	0.88	4.17	1.8	0.004	0.76	0.0	0.05	13.74	0.01	2.473	6.05	3.65	7.7	92.3	0.0	-0.66	1.78	0.76	0.92	3.65	4704	618	3	0	0	0	0	logfile
✔	8Q98	18271	2025-02-12	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.53	0.0	0.05	15.06	0.00	2.501	1.14	0.51	0.9	99.1	0.0	-0.39	1.18	0.43	0.90	7.96	7032	450	6	0	0	0	3588	logfile
✔	8XZH	38796	2025-02-13	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.004	0.61	0.0	0.04	16.43	0.00	2.475	5.74	2.65	2.3	97.7	0.0	1.04	0.45	0.78	0.85	4.07	9048	1159	6	0	0	0	0	logfile
✔	9JSX	61786	2025-02-11	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.53	0.0	0.05	12.47	0.00	2.679	4.26	0.00	5.5	94.5	0.0	-1.31	0.77	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile

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