Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J89	6123	2025-02-13	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.48	0.0	0.03	20.05	0.00	2.208	5.43	3.26	0.2	99.8	0.0	3.55	1.37	0.81	0.79	0.02	9025	551	19	0	0	0	4598	logfile
✔	6A7F	6993	2025-02-14	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.73	0.0	0.05	17.73	0.00	2.431	14.38	2.85	0.4	99.6	0.0	2.09	2.04	0.60	0.87	0.03	10830	1410	30	0	0	0	0	logfile
✔	9GQo	51510	2025-02-11	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.004	0.86	0.0	0.04	18.13	0.00	1.907	20.42	3.87	7.2	92.8	0.0	-0.95	1.41	0.82	0.82	0.04	6716	880	2	0	3	0	0	logfile
✔	7WX4	32876	2025-02-10	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.54	0.0	0.04	17.67	0.00	2.448	4.97	5.48	5.2	94.8	0.0	0.20	0.46	0.45	0.82	0.06	1992	260	2	0	0	0	0	logfile
✔	7VQ4	32085	2025-02-11	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.59	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.003	0.67	0.0	0.04	17.38	0.00	2.607	6.53	5.03	3.4	96.6	0.0	3.11	1.26	0.58	0.78	0.07	6306	800	2	0	0	0	0	logfile
✔	8XEL	38293	2025-02-14	2023-12-12	2.8	3.35	2.85	10.0	0.012	1.77	5.0	0.10	13.06	0.02	2.551	0.00	0.88	4.4	95.2	0.4	-0.52	0.19	0.01	0.17	2.9	0.004	0.79	0.0	0.05	16.62	0.01	2.224	75.69	4.40	9.0	91.0	0.0	-2.00	1.49	0.34	0.33	0.07	10119	1071	2	0	0	0	1837	logfile
✔	8WLL	37623	2025-02-10	2023-09-30	3.74	3.82	3.77	3.9	0.024	1.06	0.0	0.10	13.07	0.01	2.238	10.14	0.00	2.9	97.1	0.0	0.58	0.50	0.76	1.39	3.8	0.004	0.91	0.0	0.05	15.88	0.00	2.545	10.68	5.40	3.4	96.6	0.0	0.76	1.28	0.49	0.77	0.17	2815	389	2	0	1	0	0	logfile
✔	7E7S	31003	2025-02-12	2021-02-27	3.3	3.32	3.27	3.4	0.003	0.50	0.0	0.04	14.41	0.00	2.166	8.26	0.00	2.6	97.4	0.0	-0.13	0.68	0.82	1.44	3.4	0.002	0.55	0.0	0.04	15.96	0.00	2.326	5.99	1.03	2.7	97.3	0.0	1.37	1.29	0.65	0.81	0.19	7884	1020	2	0	2	0	0	logfile
✔	8T23	40979	2025-02-11	2023-06-05	3.87	4.12	4.24	7.5	0.005	1.00	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.3	0.004	0.83	0.0	0.05	18.35	0.01	2.474	17.64	3.66	11.0	89.0	0.0	-2.62	1.44	0.64	0.59	0.19	6451	781	6	0	6	0	0	logfile
✔	6NPY	0476	2025-02-12	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.89	0.0	0.05	17.42	0.01	2.495	15.31	3.37	10.8	89.2	0.0	-2.37	1.09	0.78	0.71	0.20	7586	965	3	0	1	0	0	logfile
✔	7LC9	23270	2025-02-11	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.005	0.75	0.0	0.05	17.16	0.00	2.444	30.19	6.78	12.6	87.4	0.0	-3.68	0.68	0.69	0.79	0.22	3497	525	12	0	0	0	0	logfile
✔	7RTT	24688	2025-02-11	2021-08-15	3.5	3.91	—	3.9	0.003	0.63	0.0	0.04	20.57	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.003	0.56	0.0	0.04	15.69	0.00	2.307	5.66	0.75	4.5	95.5	0.0	3.67	1.65	0.61	0.73	0.22	6268	791	8	0	14	0	0	logfile
✔	7RTV	24690	2025-02-10	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	24.99	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.003	0.93	0.0	0.05	17.54	0.00	2.376	13.34	5.19	1.9	98.1	0.0	3.30	0.51	0.41	0.63	0.28	2881	366	3	0	6	0	0	logfile
✔	8V12	42878	2025-02-12	2023-11-19	3.81	4.38	3.83	4.1	0.002	0.50	0.0	0.04	11.58	0.00	2.196	11.64	2.72	1.8	98.2	0.0	2.07	0.60	0.68	-0.08	4.1	0.003	0.80	0.0	0.05	14.93	0.00	2.448	16.23	3.51	3.0	97.0	0.0	1.65	0.96	0.62	0.77	0.30	7960	979	2	0	2	0	0	logfile
✔	7YG1	33804	2025-02-11	2022-07-09	3.77	4.01	3.78	3.9	0.005	1.15	1.0	0.06	14.00	0.01	2.230	42.79	1.33	14.0	86.0	0.0	-3.77	0.65	0.65	0.57	3.9	0.003	0.91	0.0	0.05	16.95	0.00	2.536	18.88	4.72	7.7	92.1	0.1	-1.69	1.44	0.67	0.68	0.34	6208	770	2	0	0	0	0	logfile
✔	8YH5	39281	2025-02-13	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	1.09	0.0	0.05	16.27	0.00	1.852	15.78	2.94	4.5	95.4	0.1	-0.18	1.16	0.64	0.66	0.35	8695	1103	6	0	1	0	0	logfile
✔	8TSQ	41598	2025-02-13	2023-08-11	3.6	3.91	3.59	3.9	0.004	0.65	0.0	0.04	16.89	0.00	2.234	10.06	0.51	4.3	95.7	0.0	1.04	0.67	0.72	0.85	3.9	0.003	0.62	0.0	0.04	17.20	0.00	2.500	8.07	2.97	3.8	96.2	0.0	1.39	1.14	0.69	0.77	0.35	8918	1150	2	0	0	0	0	logfile
✔	8ZYW	60581	2025-02-13	2024-06-18	3.43	3.41	3.36	3.6	0.003	0.55	0.0	0.04	17.93	0.00	2.109	8.67	0.32	1.7	98.3	0.0	3.05	0.60	0.78	0.40	3.6	0.003	0.48	0.0	0.04	18.39	0.00	2.493	6.24	3.09	1.7	98.3	0.0	3.86	0.27	0.55	0.78	0.36	8910	1174	10	0	0	4	0	logfile
✔	6XSS	22305	2025-02-12	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.006	0.83	0.0	0.04	16.92	0.01	2.513	20.49	3.28	2.4	97.6	0.0	2.00	1.27	0.75	0.80	0.36	8048	1040	4	0	0	0	0	logfile
✔	9F6P	50237	2025-02-11	2024-05-02	3.7	3.92	3.71	4.0	0.004	0.93	0.0	0.05	18.01	0.01	2.090	19.52	2.05	2.7	97.3	0.0	1.39	0.48	0.70	1.10	4.0	0.004	0.81	0.0	0.04	17.78	0.00	2.167	15.41	6.15	4.2	95.8	0.0	1.13	0.79	0.53	0.74	0.37	3720	482	2	0	1	0	0	logfile

• ← previous
• Page 2 of 255
• next →