Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N73	24218	2025-02-12	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.00	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.002	0.85	0.0	0.04	14.21	0.00	1.265	4.48	1.09	2.3	97.7	0.0	2.32	0.34	0.69	0.84	2.06	7866	1036	2	0	6	3	0	logfile
✔	8GYW	34378	2025-02-11	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	16.78	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	4.0	0.003	0.70	0.0	0.04	16.57	0.00	1.273	12.05	4.68	1.5	98.5	0.0	2.61	1.24	0.49	0.76	0.67	6076	760	4	0	6	0	0	logfile
✔	6TA3	10421	2025-02-14	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.96	0.01	0.439	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.005	0.95	0.0	0.05	18.50	0.01	1.331	26.63	5.24	3.3	96.6	0.1	-0.31	2.44	0.78	0.73	0.48	9491	1201	6	0	5	0	0	logfile
✔	8oo9	17007	2025-02-11	2023-04-04	3.2	2.32	3.17	3.1	0.010	1.70	0.0	0.06	20.61	0.01	1.879	4.84	0.00	2.3	97.7	0.0	-2.21	0.81	0.78	3.72	3.1	0.004	1.04	0.0	0.04	22.16	0.00	1.338	6.80	2.02	2.6	97.4	0.0	-0.71	1.13	0.83	0.81	2.35	4516	439	4	42	3	0	0	logfile
✔	7BSV	30168	2025-02-14	2020-03-31	3.0	3.16	—	3.1	0.005	1.15	0.0	0.05	19.27	0.01	1.809	30.62	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.003	0.90	0.0	0.04	17.78	0.00	1.349	7.44	2.46	5.3	94.7	0.0	-0.38	0.99	0.63	0.88	3.42	9339	1139	6	0	8	4	0	logfile
✔	7N70	24214	2025-02-12	2021-06-09	2.8	3.43	2.92	3.3	0.005	0.73	0.0	0.05	13.22	0.01	2.109	7.93	0.00	1.6	98.4	0.0	0.27	0.74	0.85	2.88	3.3	0.003	0.58	0.0	0.04	15.12	0.00	1.351	6.38	1.85	1.8	98.2	0.0	1.66	0.43	0.63	0.77	2.05	7953	1032	2	0	4	0	0	logfile
✔	7W3X	32295	2025-02-12	2021-11-26	3.21	2.33	3.15	2.2	0.004	0.76	0.0	0.05	18.43	0.00	2.190	8.18	0.00	9.0	91.0	0.0	-2.95	0.77	0.79	3.38	2.2	0.010	1.28	2.0	0.05	15.65	0.01	1.393	10.48	1.61	8.5	91.5	0.0	-2.77	0.95	0.78	0.82	2.86	7429	893	7	0	31	0	0	logfile
✔	6JT2	9885	2025-02-13	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.36	0.01	1.980	10.08	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.006	1.17	2.0	0.06	13.92	0.01	1.393	10.34	3.78	3.4	96.6	0.0	0.38	1.65	0.82	0.82	1.12	8191	1075	4	0	4	0	0	logfile
✔	6XMU	22264	2025-02-13	2020-06-30	3.3	3.92	3.36	3.6	0.004	0.58	0.0	0.04	11.80	0.00	1.956	6.47	0.00	4.3	95.7	0.0	-2.43	0.72	0.83	2.22	3.7	0.003	0.56	0.0	0.04	13.73	0.00	1.421	4.55	1.02	3.7	96.3	0.0	0.73	0.39	0.73	0.86	1.53	8411	1090	3	0	22	0	0	logfile
✔	7oP8	13014	2025-02-13	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.003	0.65	0.0	0.04	16.20	0.00	1.425	8.99	2.46	6.4	93.6	0.0	-0.72	0.94	0.66	0.78	0.71	8872	1118	2	0	2	0	0	logfile
✔	8SD0	40348	2025-02-11	2023-04-06	3.8	3.94	3.78	3.9	0.004	0.86	0.0	0.05	18.36	0.01	2.276	9.69	0.52	6.8	93.2	0.0	-1.62	0.73	0.79	1.64	3.9	0.003	0.66	0.0	0.04	18.75	0.00	1.466	10.66	3.30	6.4	93.6	0.0	-0.32	0.46	0.73	0.79	1.99	5829	636	3	31	2	0	0	logfile
✔	6PR5	20457	2025-02-14	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.94	0.00	1.963	13.80	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	3.6	0.003	0.63	0.0	0.04	23.39	0.00	1.474	8.74	2.71	5.1	94.9	0.0	0.43	1.14	0.75	0.82	2.32	10194	960	10	124	6	0	0	logfile
✔	7L1F	23109	2025-02-13	2020-12-14	3.89	2.82	—	2.2	0.008	1.36	3.0	0.08	14.82	0.01	2.323	3.11	0.00	6.6	93.4	0.0	-4.38	0.72	0.70	2.25	2.3	0.003	0.68	0.0	0.04	16.64	0.00	1.482	10.33	3.48	5.8	94.2	0.0	-1.25	1.21	0.73	0.71	1.41	8825	1009	6	31	4	0	0	logfile
✔	8E5G	27912	2025-02-13	2022-08-22	3.9	4.43	4.33	4.2	0.006	1.05	10.0	0.10	17.24	0.00	1.918	47.42	0.00	9.6	89.9	0.5	-2.33	0.62	0.75	0.01	4.2	0.005	1.06	0.0	0.04	18.87	0.00	1.514	13.81	2.99	9.9	89.3	0.8	-2.91	0.79	0.63	0.76	0.70	9065	1100	10	0	20	0	0	logfile
✔	8Q74	18203	2025-02-11	2023-08-15	3.68	4.60	3.68	4.2	0.004	1.02	0.0	0.05	14.01	0.01	1.633	20.98	0.15	15.9	83.2	0.9	-2.37	0.66	0.80	1.25	4.3	0.003	0.83	0.0	0.05	16.25	0.01	1.515	15.49	2.16	12.5	86.6	0.9	-1.34	1.04	0.66	0.80	0.62	5943	783	2	0	1	0	0	logfile
✔	8iWS	35778	2025-02-12	2023-03-31	3.42	3.63	3.46	3.7	0.003	0.65	2.0	0.04	16.82	0.00	1.757	7.59	0.92	4.4	95.6	0.0	2.06	0.67	0.75	1.15	3.6	0.003	0.66	0.0	0.04	17.71	0.00	1.525	9.11	2.88	3.6	96.4	0.0	1.15	0.61	0.67	0.81	1.78	6809	890	2	0	3	0	0	logfile
✔	7To1	26026	2025-02-11	2022-01-22	3.66	3.88	—	3.9	0.012	1.05	0.0	0.06	15.28	0.00	2.314	6.92	0.00	8.3	91.7	0.0	-2.28	0.73	0.81	1.82	3.9	0.003	0.65	0.0	0.04	17.02	0.00	1.527	7.92	2.98	7.0	93.0	0.0	-0.29	0.58	0.72	0.79	1.82	5601	635	3	21	2	0	0	logfile
✔	7X1T	32949	2025-02-12	2022-02-24	3.26	3.46	—	3.5	0.007	0.98	3.0	0.22	13.90	0.01	1.351	5.09	0.92	8.9	91.0	0.1	-5.73	0.60	0.70	1.68	3.5	0.004	0.75	0.0	0.05	15.08	0.01	1.534	9.34	4.27	8.7	91.3	0.0	-3.05	0.43	0.61	0.72	1.54	7488	1082	7	0	1	0	0	logfile
✔	8JLo	36402	2025-02-12	2023-06-02	3.52	3.78	3.53	3.7	0.003	0.69	0.0	0.04	14.26	0.00	2.257	7.12	0.25	4.5	95.5	0.0	-0.64	0.59	0.79	2.09	3.7	0.003	0.96	0.0	0.04	16.32	0.00	1.565	5.75	1.88	4.3	95.6	0.1	0.21	0.40	0.65	0.82	1.82	7343	922	5	0	1	0	0	logfile
✔	7UQX	26701	2025-02-14	2022-04-20	3.3	2.35	3.18	2.0	0.003	0.52	0.0	0.04	11.93	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.005	0.74	0.0	0.04	14.64	0.00	1.613	13.96	4.17	4.5	95.5	0.0	-0.26	0.96	0.75	0.75	3.09	9491	1154	7	2	5	0	0	logfile

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