Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A7T	15225	2025-02-11	2022-06-21	3.0	2.93	3.07	3.2	0.003	0.46	0.0	0.04	8.48	0.00	2.026	5.04	0.00	2.8	97.2	0.0	-4.48	0.39	0.85	4.72	3.2	0.004	0.70	0.0	0.05	15.64	0.00	2.432	7.97	4.76	2.5	97.5	0.0	-3.90	1.17	0.42	0.88	4.17	3702	444	6	0	0	0	0	logfile
✔	7Xo2	33334	2025-02-10	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.003	0.45	0.0	0.05	18.75	0.00	2.634	3.05	3.49	5.8	94.2	0.0	-1.60	1.11	0.50	0.88	6.14	2550	372	6	0	0	0	0	logfile
✔	7oZH	13124	2025-02-11	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.003	0.66	0.0	0.05	14.81	0.00	2.569	14.21	5.90	7.7	92.3	0.0	-2.22	1.43	0.40	0.68	0.89	3890	580	10	0	0	0	0	logfile
✔	7EJC	31158	2025-02-12	2021-04-02	2.97	3.25	—	3.0	0.011	1.18	0.0	0.05	16.42	0.00	1.616	11.47	4.17	5.2	94.4	0.3	-3.39	0.63	0.84	3.61	3.0	0.002	0.64	0.0	0.04	16.63	0.00	2.068	7.22	0.94	4.5	95.5	0.0	-0.01	1.42	0.68	0.91	2.72	7485	930	7	9	9	0	0	logfile
✔	8ADS	15369	2025-02-11	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.008	0.71	0.0	0.06	16.66	0.00	2.597	11.39	4.04	3.8	96.2	0.0	-3.66	0.52	0.49	0.82	6.19	5170	750	10	0	0	0	0	logfile
✔	7QK2	14029	2025-02-10	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.15	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.8	0.005	0.68	0.0	0.05	17.13	0.00	2.608	3.78	4.84	2.9	97.1	0.0	-1.87	1.30	0.37	0.88	5.85	3246	426	6	0	0	0	0	logfile
✔	7QVC	14174	2025-02-10	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.7	0.004	0.70	0.0	0.06	18.08	0.00	2.569	6.92	4.50	5.3	94.7	0.0	-2.28	0.98	0.42	0.89	5.81	3255	405	3	0	0	0	0	logfile
✔	8Vi3	43247	2025-02-12	2024-01-03	2.9	3.36	3.11	3.3	0.002	0.44	0.0	0.04	12.32	0.00	2.186	4.59	0.00	1.2	98.8	0.0	2.50	0.69	0.87	5.29	3.3	0.002	0.47	0.0	0.04	14.71	0.00	2.494	3.78	0.78	1.7	98.3	0.0	2.31	0.33	0.64	0.89	4.41	7359	924	3	0	0	0	0	logfile
✔	7YSN	34077	2025-02-12	2022-08-12	3.5	4.04	3.45	3.7	0.006	0.69	0.0	0.04	14.72	0.00	2.131	15.18	0.00	3.6	96.4	0.0	0.33	0.81	0.79	1.89	3.7	0.003	0.75	0.0	0.05	16.87	0.00	2.466	16.37	2.17	4.2	95.8	0.0	-0.35	0.99	0.81	0.80	1.67	6844	864	4	0	2	0	0	logfile
✔	8P34	17383	2025-02-10	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.47	0.0	0.05	14.27	0.00	2.698	0.69	0.00	3.3	96.7	0.0	-1.59	0.32	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	6R4R	4727	2025-02-11	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.6	0.005	0.83	0.0	0.05	16.94	0.00	2.529	14.30	4.76	9.3	90.7	0.0	-4.68	1.38	0.32	0.67	4.06	4312	539	7	0	0	0	0	logfile
✔	8ooY	17033	2025-02-11	2023-04-06	4.0	3.79	3.92	3.7	0.004	0.68	0.0	0.04	20.02	0.00	2.016	12.57	0.79	5.1	94.9	0.0	-0.97	0.81	0.77	—	3.7	0.004	0.66	0.0	0.04	21.17	0.00	2.180	10.61	1.77	6.0	94.0	0.0	-0.07	0.44	0.81	0.78	—	5828	604	5	51	1	0	0	logfile
✔	8X7B	38097	2025-02-11	2023-11-23	3.0	3.06	2.30	3.3	0.017	1.42	0.0	0.08	17.12	0.01	2.297	30.43	0.00	9.4	90.6	0.0	-4.07	0.39	0.50	4.60	3.3	0.004	0.67	0.0	0.05	16.98	0.00	2.568	11.28	2.11	6.8	93.2	0.0	-3.34	1.34	0.59	0.84	3.61	4020	550	16	0	12	0	0	logfile
✔	8GMU	34154	2025-02-11	2022-08-22	2.78	2.51	2.71	2.7	0.003	0.55	0.0	0.04	19.47	0.00	1.941	8.36	1.73	1.8	98.0	0.3	1.01	0.46	0.82	2.96	2.8	0.003	0.51	0.0	0.04	19.46	0.00	1.981	6.67	2.99	1.5	98.4	0.1	1.14	1.21	0.45	0.82	2.89	6214	797	6	6	4	0	0	logfile
✔	7U15	26278	2025-02-11	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.71	0.0	0.11	15.78	0.00	2.407	10.40	3.97	16.0	84.0	0.0	-5.26	0.91	0.27	0.69	2.87	6684	405	6	0	12	0	3255	logfile
✔	7UMQ	26607	2025-02-11	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	2.21	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.9	0.007	0.93	0.0	0.05	14.42	0.00	2.612	16.65	6.92	13.5	86.2	0.3	-5.30	3.37	0.43	0.76	5.08	4380	620	10	0	0	0	0	logfile
✔	8GMT	34153	2025-02-11	2022-08-22	3.31	2.91	3.22	3.2	0.003	0.52	0.0	0.04	18.12	0.00	1.995	6.94	0.32	1.8	98.2	0.0	1.01	0.43	0.80	1.29	3.2	0.003	0.54	0.0	0.04	18.58	0.00	1.997	6.38	3.31	1.5	98.5	0.0	0.45	0.38	0.41	0.81	1.37	6172	796	7	6	4	0	0	logfile
✔	6N1H	8902	2025-02-14	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.73	0.0	0.04	16.82	0.00	2.423	8.58	1.44	4.2	95.8	0.0	0.27	2.37	0.61	0.83	1.49	10991	1328	16	0	0	0	0	logfile
✔	8oRG	17123	2025-02-11	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.003	0.58	0.0	0.05	16.18	0.00	2.568	0.50	0.88	2.0	98.0	0.0	-2.93	1.12	0.37	0.82	4.32	3966	258	3	0	0	0	2025	logfile
✔	8EHR	28150	2025-02-12	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.003	0.53	0.0	0.04	15.72	0.00	2.539	3.44	2.56	0.8	99.2	0.0	1.11	1.16	0.58	0.87	3.51	7350	1022	7	0	0	0	0	logfile

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