Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PoM	20416	2025-02-11	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.006	0.94	0.0	0.05	26.62	0.01	1.998	32.05	0.00	0.0	0.0	0.0	—	1.73	0.75	0.79	—	4937	0	2	230	0	0	0	logfile
✔	7SAM	24952	2025-02-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.87	0.0	0.04	28.10	0.01	1.833	65.98	0.00	0.0	0.0	0.0	—	5.47	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	7QV6	14168	2025-02-11	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.42	0.0	0.06	11.94	0.00	2.496	1.65	0.00	0.0	100.0	0.0	0.67	0.40	0.40	0.86	6.10	4842	306	18	0	0	0	2556	logfile
✔	8TJQ	41308	2025-02-13	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.78	0.0	0.04	24.52	0.01	1.771	21.71	0.00	0.0	0.0	0.0	—	0.17	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	7YGD	33816	2025-02-12	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.008	0.78	0.0	0.04	25.33	0.01	1.824	28.58	0.00	0.0	0.0	0.0	—	1.89	0.91	0.89	—	8313	0	4	389	6	0	0	logfile
✔	8TJU	41311	2025-02-14	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.83	0.01	1.789	23.91	0.00	0.0	0.0	0.0	—	0.46	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	7UR5	26705	2025-02-11	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.007	0.97	0.0	0.05	27.17	0.01	1.981	14.29	0.00	0.0	0.0	0.0	—	1.53	0.08	0.70	—	5709	0	3	270	0	0	0	logfile
✔	8KF5	37199	2025-02-10	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.003	0.59	0.0	0.06	15.87	0.00	2.658	4.32	0.00	0.0	100.0	0.0	-0.04	0.92	0.38	0.88	8.22	1500	204	6	0	0	0	0	logfile
✔	7RX5	24725	2025-02-13	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.32	0.0	0.03	12.78	0.00	2.693	2.28	0.00	0.0	100.0	0.0	5.58	0.18	0.70	0.87	2.85	9120	1160	40	0	0	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	7QKZ	14058	2025-02-10	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.53	0.0	0.38	19.56	0.01	2.194	11.82	2.02	0.0	100.0	0.0	-1.59	5.48	0.34	0.63	6.43	1701	99	9	0	0	0	891	logfile
✔	7URM	26714	2025-02-10	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.72	0.01	2.028	23.68	0.00	0.0	0.0	0.0	—	1.30	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	7UGD	26487	2025-02-11	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.003	0.55	0.0	0.04	14.51	0.00	2.257	3.64	1.25	0.0	100.0	0.0	3.11	0.48	0.49	0.84	1.74	3079	415	2	0	3	0	0	logfile
✔	8AZ1	15729	2025-02-10	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.53	0.0	0.05	12.99	0.00	1.620	3.14	0.00	0.0	100.0	0.0	-2.21	0.43	0.47	0.85	5.53	1830	250	20	0	10	0	0	logfile
✔	8oTF	17177	2025-02-10	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.003	0.49	0.0	0.05	16.36	0.00	2.524	3.27	1.45	0.0	100.0	0.0	-0.78	0.49	0.43	0.89	6.50	1350	186	6	0	0	0	0	logfile
✔	7URi	26713	2025-02-10	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.7	0.007	1.37	0.0	0.06	28.71	0.01	2.201	19.50	0.00	0.0	0.0	0.0	—	2.07	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7YC8	33736	2025-02-12	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.970	59.75	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	6QJP	4565	2025-02-10	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.002	0.60	0.0	0.05	12.51	0.00	2.600	7.52	3.92	0.0	100.0	0.0	-2.97	1.60	0.31	0.71	2.85	816	105	3	0	0	0	0	logfile
✔	7YG8	33811	2025-02-12	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.008	0.71	0.0	0.04	24.57	0.00	1.803	17.58	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	7RZQ	24774	2025-02-10	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.004	0.35	0.0	0.03	14.97	0.00	2.615	4.49	1.07	0.0	100.0	0.0	5.42	0.29	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile

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