Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R7N	24299	2025-02-10	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.31	0.00	2.553	0.78	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.005	0.76	0.0	0.05	14.19	0.00	2.577	7.75	5.83	4.8	95.2	0.0	-0.88	1.33	0.84	0.81	2.40	2790	391	4	0	3	0	0	logfile
✔	6ZQi	11364	2025-02-11	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.44	0.00	2.336	6.03	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.76	0.0	0.05	15.69	0.00	2.323	7.64	4.28	4.5	95.5	0.0	-0.19	0.64	0.67	0.79	1.24	5032	655	4	0	1	0	0	logfile
✔	7JV2	22491	2025-02-10	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.007	0.89	0.0	0.05	15.37	0.00	2.544	13.08	4.41	8.0	92.0	0.0	-1.54	1.27	0.71	0.78	3.88	2151	282	3	0	0	0	0	logfile
✔	7ZZ4	15034	2025-02-11	2022-05-25	2.63	3.04	2.56	2.2	0.008	1.05	0.0	0.05	18.14	0.00	2.035	5.21	0.27	3.3	96.7	0.0	-0.79	0.86	0.84	4.14	2.2	0.004	0.57	0.0	0.04	17.57	0.00	1.895	6.99	1.59	3.9	96.1	0.0	0.88	1.09	0.87	0.85	3.95	3682	463	2	0	3	11	0	logfile
✔	7USB	26731	2025-02-10	2022-04-23	3.1	3.28	3.18	3.3	0.013	1.72	0.0	0.11	10.32	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.005	0.73	0.0	0.05	12.91	0.00	2.497	5.14	2.08	6.5	93.5	0.0	-1.54	1.02	0.61	0.84	4.98	1661	213	3	0	5	0	0	logfile
✔	6XJH	22210	2025-02-12	2020-06-23	3.6	2.83	—	3.6	0.019	1.64	0.0	0.09	11.43	0.01	2.173	3.03	0.48	1.5	98.5	0.0	1.10	0.66	0.74	1.98	3.6	0.004	0.72	0.0	0.05	16.95	0.00	1.878	12.95	5.46	3.7	96.3	0.0	0.83	1.62	0.68	0.76	1.66	7596	940	6	0	4	0	0	logfile
✔	7SRQ	25401	2025-02-11	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	14.14	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	1.9	0.003	0.69	0.0	0.04	15.32	0.00	2.644	7.91	3.50	2.4	97.6	0.0	2.38	1.00	0.72	0.76	3.49	1960	254	2	0	2	0	0	logfile
✔	6i2i	0331	2025-02-12	2018-11-01	3.6	3.72	—	3.7	0.009	1.17	0.0	0.06	16.64	0.01	2.019	7.46	0.28	7.1	92.9	0.0	-5.22	0.74	0.74	2.16	3.8	0.003	0.71	0.0	0.05	15.81	0.01	1.932	10.81	2.76	2.7	97.3	0.0	-1.39	0.85	0.75	0.75	1.37	6830	856	4	0	5	0	0	logfile
✔	7WM0	32596	2025-02-11	2022-01-14	3.35	3.62	—	3.7	0.009	1.22	0.0	0.08	12.60	0.01	2.405	9.08	0.28	5.4	94.6	0.0	-2.87	0.69	0.56	0.97	3.6	0.003	0.78	0.0	0.04	15.96	0.00	2.577	9.23	4.41	4.2	95.8	0.0	-1.55	1.72	0.75	0.66	0.91	3376	432	4	0	1	0	0	logfile
✔	5LiJ	4054	2025-02-10	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.003	0.99	0.0	0.04	8.55	0.00	2.570	10.52	0.00	26.7	73.3	0.0	-5.94	0.59	0.85	0.77	—	761	152	1	0	0	0	0	logfile
✔	6XQo	22291	2025-02-11	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.56	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.004	0.67	0.0	0.04	17.06	0.00	2.234	7.87	6.10	3.3	96.7	0.0	0.61	1.24	0.76	0.76	1.65	4301	560	4	0	4	0	0	logfile
✔	7X1R	32947	2025-02-12	2022-02-24	3.9	3.98	—	3.9	0.007	0.75	0.0	0.05	14.25	0.00	2.036	9.01	0.25	2.3	97.7	0.0	-0.91	0.74	0.82	1.82	3.9	0.003	0.70	0.0	0.05	17.11	0.00	2.462	8.55	3.76	2.9	97.1	0.0	0.27	1.76	0.74	0.82	1.77	7608	970	4	0	4	0	0	logfile
✔	6ZZU	11587	2025-02-14	2020-08-05	3.5	2.41	3.59	3.1	0.005	0.96	0.0	0.05	16.19	0.01	2.125	10.37	0.17	4.9	95.1	0.0	-4.89	0.79	0.78	3.19	3.0	0.004	0.84	0.0	0.05	17.85	0.00	2.156	21.59	3.82	5.9	94.1	0.0	-1.21	0.68	0.80	0.79	2.19	10760	1340	12	0	4	4	0	logfile
✔	6UJC	20796	2025-02-13	2019-10-02	3.56	3.89	—	3.9	0.014	1.40	0.0	0.09	11.40	0.01	1.792	0.44	0.11	3.0	97.0	0.0	0.47	0.72	0.75	2.35	3.9	0.003	0.65	0.0	0.05	13.23	0.00	2.012	6.34	2.04	4.2	95.8	0.0	-0.18	0.74	0.74	0.78	1.88	9209	1184	11	0	23	0	0	logfile
✔	9iRW	60823	2025-02-11	2024-07-16	3.26	3.49	3.15	3.5	0.007	0.72	0.0	0.04	11.88	0.01	2.239	8.79	3.47	4.9	95.1	0.0	-0.95	0.58	0.79	2.21	3.5	0.004	0.66	0.0	0.04	14.50	0.00	2.500	8.40	4.96	4.9	95.1	0.0	-0.63	0.29	0.61	0.82	2.37	3808	499	2	0	1	0	0	logfile
✔	7F46	31444	2025-02-11	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.32	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.5	0.009	1.21	0.0	0.06	13.45	0.01	2.362	42.04	0.00	12.5	87.5	0.0	-2.63	1.98	0.80	0.64	—	6564	842	6	0	2	0	0	logfile
✔	8HHL	34803	2025-02-12	2022-11-16	2.87	3.25	2.89	3.1	0.004	0.50	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.005	0.61	0.0	0.04	22.89	0.00	1.904	5.39	2.92	1.4	98.6	0.0	2.58	2.37	0.82	0.86	3.64	6971	592	6	111	4	0	0	logfile
✔	9G2U	50984	2025-02-11	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.53	0.0	0.03	15.79	0.00	2.572	6.44	1.55	0.7	99.3	0.0	6.39	4.28	0.70	0.83	0.49	3634	456	2	0	0	0	0	logfile
✔	8F6T	28890	2025-02-11	2022-11-17	2.76	3.61	2.91	3.4	0.004	0.63	0.0	0.04	12.87	0.00	2.119	4.79	0.00	5.4	94.6	0.0	0.80	0.65	0.86	3.26	3.4	0.003	0.56	0.0	0.04	14.85	0.00	2.162	4.36	0.84	5.4	94.6	0.0	1.27	0.35	0.62	0.85	1.85	3473	428	2	0	4	0	0	logfile
✔	7F6G	31479	2025-02-13	2021-06-25	2.9	3.07	—	3.0	0.009	0.98	0.0	0.08	13.90	0.00	2.197	4.74	0.65	3.0	97.0	0.0	-0.57	0.67	0.78	2.90	3.1	0.003	0.57	0.0	0.04	15.67	0.00	2.485	4.68	2.59	2.6	97.4	0.0	1.11	1.11	0.64	0.80	1.90	8697	1061	6	0	7	0	0	logfile

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