Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Wi2	37555	2025-02-14	2023-09-24	4.06	4.53	4.17	4.3	0.003	0.66	0.0	0.04	17.70	0.00	2.106	11.61	0.67	3.1	96.9	0.0	2.17	0.67	0.79	—	4.3	0.004	0.67	0.0	0.04	14.28	0.00	2.508	9.80	0.00	3.4	96.6	0.0	1.86	1.34	0.69	0.79	—	9537	1214	2	0	0	0	0	logfile
✔	8RiA	19185	2025-02-13	2023-12-18	4.4	4.78	4.46	4.6	0.006	1.99	44.0	0.12	13.30	0.01	1.922	29.52	0.21	10.3	89.1	0.6	-1.40	0.66	0.77	—	4.6	0.003	0.82	0.0	0.05	13.36	0.01	2.408	15.07	0.00	7.6	92.1	0.4	-0.20	1.28	0.65	0.75	—	8786	1142	2	0	0	0	0	logfile
✔	9F6K	50227	2025-02-14	2024-05-01	4.2	4.50	4.10	4.4	0.003	0.66	0.0	0.04	16.57	0.01	2.304	2.22	0.10	2.1	97.9	0.0	-1.36	0.74	0.79	—	4.3	0.003	0.62	0.0	0.04	16.38	0.00	2.400	4.69	0.00	1.9	98.1	0.0	0.96	1.65	0.76	0.81	—	9637	1118	4	26	1	0	0	logfile
✔	8KEW	37170	2025-02-10	2023-08-13	3.3	2.65	2.55	3.4	0.010	0.84	0.0	0.07	14.46	0.00	2.387	8.30	0.00	3.1	96.9	0.0	-3.87	0.36	0.85	5.24	3.4	0.003	0.61	0.0	0.06	16.68	0.00	2.589	3.98	0.00	2.1	97.9	0.0	-1.23	0.41	0.33	0.83	6.43	1500	204	6	0	0	0	0	logfile
✔	8UP1	42442	2025-02-12	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.006	0.83	0.0	0.04	5.82	0.00	2.030	6.29	0.00	8.2	91.5	0.3	0.10	2.24	0.82	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	9B5X	44228	2025-02-14	2024-03-22	4.16	4.88	4.31	4.2	0.002	0.44	0.0	0.04	9.37	0.00	2.006	2.74	1.51	1.9	98.1	0.0	0.97	0.89	0.81	—	4.2	0.002	0.53	0.0	0.04	10.90	0.00	1.912	6.17	0.00	2.4	97.6	0.0	1.68	1.28	0.91	0.84	—	9527	1207	5	0	4	0	0	logfile
✔	9JSV	61784	2025-02-11	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile
✔	8K9i	36987	2025-02-12	2023-08-01	4.2	2.69	4.05	3.8	0.018	1.41	0.0	0.10	15.71	0.01	2.377	21.05	5.67	6.7	93.3	0.0	-1.38	0.61	0.54	—	3.8	0.003	0.69	0.0	0.04	14.60	0.00	2.486	13.79	0.00	2.8	97.2	0.0	1.01	1.27	0.64	0.59	—	7657	939	4	0	0	0	0	logfile
✔	8UQK	42472	2025-02-12	2023-10-23	4.61	6.61	4.59	5.7	0.003	0.86	0.0	0.04	13.61	0.01	2.184	21.41	0.00	6.5	93.4	0.1	-2.07	0.86	0.72	—	5.7	0.003	0.77	0.0	0.04	14.24	0.01	2.480	15.22	0.00	8.4	91.4	0.2	-2.46	2.65	0.85	0.67	—	7318	962	2	0	0	0	0	logfile
✔	8RK4	19259	2025-02-12	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.995	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.67	0.0	0.04	11.73	0.00	2.474	8.31	0.00	7.4	92.4	0.3	-1.77	0.86	0.94	0.77	—	8373	1119	3	0	0	0	0	logfile
✔	9BCo	44432	2025-02-11	2024-04-09	4.4	4.70	4.38	4.6	0.005	0.88	1.0	0.05	12.78	0.01	2.105	8.36	0.00	7.3	92.7	0.0	-1.99	0.75	0.73	—	4.6	0.003	0.62	0.0	0.04	11.36	0.00	2.399	3.15	0.00	5.2	94.8	0.0	-0.07	0.71	0.76	0.76	—	6164	1038	4	0	2	0	0	logfile
✔	9JSX	61786	2025-02-11	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.53	0.0	0.05	12.47	0.00	2.679	4.26	0.00	5.5	94.5	0.0	-1.31	0.77	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile
✔	8YET	39203	2025-02-14	2024-02-23	4.16	4.38	4.16	4.3	0.003	0.74	0.0	0.04	17.60	0.00	2.213	8.71	0.09	5.8	94.1	0.1	1.34	0.62	0.75	—	4.3	0.003	0.64	0.0	0.04	16.35	0.00	2.375	8.01	0.00	5.3	94.5	0.2	1.31	1.62	0.62	0.75	—	10102	1206	3	0	2	0	0	logfile
✔	8URE	42491	2025-02-13	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.7	0.009	0.83	0.0	0.03	5.57	0.01	2.468	3.69	0.00	5.7	94.3	0.0	-1.13	0.68	0.82	0.83	—	8896	1792	8	0	0	0	0	logfile
✔	9C6i	45247	2025-02-12	2024-06-07	2.56	3.19	2.65	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	8RFB	19117	2025-02-11	2023-12-12	4.01	4.26	4.04	4.2	0.015	1.68	0.0	0.10	11.24	0.01	2.144	5.97	2.04	2.7	97.3	0.0	0.42	0.73	0.77	—	4.2	0.003	0.66	0.0	0.04	13.35	0.00	2.489	8.51	0.00	3.2	96.8	0.0	0.23	0.95	0.71	0.78	—	4632	597	1	0	0	0	0	logfile
✔	8UPH	42448	2025-02-12	2023-10-22	4.13	4.91	4.16	4.4	0.004	0.71	0.0	0.04	14.18	0.02	2.236	13.34	0.12	2.3	97.6	0.1	-0.18	0.89	0.85	—	4.4	0.005	0.74	0.0	0.04	14.45	0.01	2.490	12.91	0.00	3.4	96.6	0.0	-0.42	0.88	0.90	0.87	—	8121	1054	4	0	2	0	0	logfile
✔	8YFU	39230	2025-02-13	2024-02-25	4.59	4.78	4.51	4.6	0.003	0.67	0.0	0.04	12.85	0.00	2.081	12.72	0.00	5.3	94.4	0.3	1.47	0.55	0.70	—	4.6	0.003	0.67	0.0	0.04	12.82	0.00	2.368	11.40	0.00	5.5	94.3	0.3	1.85	0.50	0.55	0.71	—	8419	1161	2	0	0	0	0	logfile
✔	8H3U	32828	2025-02-11	2022-10-09	4.7	3.74	—	2.6	0.002	0.56	0.0	0.04	7.77	0.00	2.279	8.94	1.98	5.8	94.1	0.1	-3.28	0.52	0.42	—	2.2	0.003	0.66	0.0	0.05	9.78	0.00	2.468	13.61	0.00	9.4	90.6	0.0	-1.65	0.87	0.53	0.41	—	6383	818	2	0	0	0	0	logfile
✔	9BVo	44939	2025-02-11	2024-05-20	4.4	4.59	4.27	4.5	0.003	0.64	0.0	0.08	16.83	0.01	2.321	2.66	5.68	2.7	97.3	0.0	-0.49	0.51	0.69	—	4.5	0.003	0.73	0.0	0.06	12.82	0.00	2.517	7.89	0.00	5.3	94.7	0.0	1.34	1.02	0.60	0.77	—	5469	642	5	0	8	0	0	logfile

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