Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WNZ	32636	2025-02-13	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.005	0.69	0.0	0.05	12.42	0.00	2.445	10.03	0.64	13.7	86.3	0.0	-5.82	0.51	0.31	0.67	5.22	9300	650	10	0	0	0	4780	logfile
✔	8HiA	34813	2025-02-12	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.4	0.010	1.21	0.0	0.06	13.75	0.03	1.994	43.61	4.76	14.3	85.7	0.0	-5.76	11.82	0.69	0.27	—	7200	460	20	0	0	0	3660	logfile
✔	7Q64	13851	2025-02-12	2021-11-05	2.76	2.81	2.66	2.9	0.014	1.34	0.0	0.09	10.20	0.01	2.276	7.23	3.83	8.3	91.7	0.0	-6.01	0.58	0.78	3.39	2.8	0.005	0.74	0.0	0.04	14.56	0.00	2.569	11.65	5.93	5.4	94.6	0.0	-5.73	0.74	0.59	0.86	3.85	7810	1100	30	0	0	0	0	logfile
✔	7DA4	30622	2025-02-10	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.93	0.0	0.04	11.82	0.00	2.605	10.10	0.00	20.0	80.0	0.0	-5.69	3.09	0.39	0.61	—	507	66	3	0	0	0	0	logfile
✔	7JSH	22454	2025-02-12	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.49	0.01	2.198	18.51	0.00	30.2	69.4	0.4	-5.64	6.11	0.72	0.66	—	7916	1904	8	15	0	0	0	logfile
✔	6SHS	10204	2025-02-11	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.3	0.003	0.68	0.0	0.05	13.07	0.00	2.424	5.03	0.00	16.2	83.8	0.0	-5.61	1.16	0.68	0.64	—	7068	480	12	0	0	0	3408	logfile
✔	7M65	23689	2025-02-10	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.86	0.0	0.04	11.94	0.00	2.288	15.03	0.00	14.1	85.9	0.0	-5.57	4.53	0.51	0.71	—	2025	275	15	0	5	0	0	logfile
✔	7KWZ	23059	2025-02-11	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	14.29	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.006	0.90	0.0	0.05	14.99	0.01	2.505	14.40	3.86	9.6	90.4	0.0	-5.53	0.97	0.49	0.84	3.98	4695	695	5	0	0	0	0	logfile
✔	6ZRQ	11382	2025-02-11	2020-07-14	3.9	4.06	—	4.2	0.009	1.22	0.0	0.05	11.93	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.66	0.0	0.04	12.73	0.00	2.496	16.87	1.85	11.7	88.3	0.0	-5.37	2.11	0.69	0.76	2.85	3948	276	12	0	0	0	1908	logfile
✔	9FoR	50628	2025-02-11	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.004	0.90	0.0	0.04	16.08	0.01	2.626	0.92	1.59	7.2	92.8	0.0	-5.35	0.40	0.53	0.91	6.30	3405	490	10	0	0	0	0	logfile
✔	7YPG	33999	2025-02-10	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.004	0.67	0.0	0.05	17.74	0.00	2.640	9.21	6.41	8.5	91.5	0.0	-5.33	0.97	0.41	0.82	3.14	2676	354	6	0	0	0	0	logfile
✔	8SBD	40305	2025-02-12	2023-04-03	3.2	3.26	4.77	3.7	0.003	0.73	0.0	0.04	12.98	0.00	2.028	18.83	5.97	6.2	93.8	0.0	-4.19	0.70	0.71	2.96	3.7	0.004	0.72	0.0	0.05	15.54	0.00	2.393	23.90	3.92	13.3	86.7	0.0	-5.31	0.74	0.72	0.74	3.87	8864	584	32	0	0	0	4280	logfile
✔	7UMQ	26607	2025-02-11	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	2.21	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.9	0.007	0.93	0.0	0.05	14.42	0.00	2.612	16.65	6.92	13.5	86.2	0.3	-5.30	3.37	0.43	0.76	5.08	4380	620	10	0	0	0	0	logfile
✔	7U15	26278	2025-02-11	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.71	0.0	0.11	15.78	0.00	2.407	10.40	3.97	16.0	84.0	0.0	-5.26	0.91	0.27	0.69	2.87	6684	405	6	0	12	0	3255	logfile
✔	7BX7	30235	2025-02-10	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.003	0.55	0.0	0.04	13.99	0.00	2.494	3.18	0.57	5.0	95.0	0.0	-5.24	0.54	0.39	0.77	5.74	1896	270	6	0	0	0	0	logfile
✔	6N3B	9350	2025-02-10	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.004	0.80	0.0	0.04	15.76	0.01	2.610	20.32	1.89	11.8	88.2	0.0	-5.23	0.80	0.39	0.66	1.36	2735	385	10	0	0	0	0	logfile
✔	7KXY	23067	2025-02-13	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.007	1.08	0.0	0.06	14.97	0.01	2.500	33.13	0.10	23.1	76.8	0.1	-5.21	1.26	0.65	0.64	—	9510	1181	2	0	0	0	0	logfile
✔	7Q65	13852	2025-02-11	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.004	0.69	0.0	0.03	13.30	0.00	2.566	11.62	10.00	8.4	91.6	0.0	-5.19	0.67	0.58	0.84	4.78	6204	880	22	0	0	0	0	logfile
✔	7C1D	30269	2025-02-10	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.005	0.77	0.0	0.05	15.28	0.00	2.465	14.46	9.38	25.5	74.5	0.0	-5.19	2.82	0.39	0.76	3.47	2034	306	6	0	0	0	0	logfile
✔	6N37	9339	2025-02-10	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.003	0.79	0.0	0.04	18.40	0.00	2.572	17.73	3.20	12.1	87.9	0.0	-5.16	0.89	0.52	0.77	2.08	2580	360	10	0	0	0	0	logfile

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