Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YGD	33816	2025-02-12	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.008	0.78	0.0	0.04	25.33	0.01	1.824	28.58	0.00	0.0	0.0	0.0	—	1.89	0.91	0.89	—	8313	0	4	389	6	0	0	logfile
✔	7YCG	33738	2025-02-13	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.008	0.69	0.0	0.04	24.55	0.00	1.842	30.51	0.00	0.0	0.0	0.0	—	0.33	0.95	0.89	—	8661	0	3	404	4	0	0	logfile
✔	7UR5	26705	2025-02-11	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.007	0.97	0.0	0.05	27.17	0.01	1.981	14.29	0.00	0.0	0.0	0.0	—	1.53	0.08	0.70	—	5709	0	3	270	0	0	0	logfile
✔	8HD7	34671	2025-02-13	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.007	0.76	0.0	0.04	23.88	0.01	1.828	13.19	0.00	0.0	0.0	0.0	—	1.49	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	8EHR	28150	2025-02-12	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.003	0.53	0.0	0.04	15.72	0.00	2.539	3.44	2.56	0.8	99.2	0.0	1.11	1.16	0.58	0.87	3.51	7350	1022	7	0	0	0	0	logfile
✔	9C6K	45249	2025-02-10	2024-06-07	2.94	3.79	2.95	3.1	0.007	0.76	0.0	0.04	26.38	0.01	1.888	17.91	0.00	0.0	0.0	0.0	—	0.89	0.84	—	3.1	0.007	0.71	0.0	0.04	25.52	0.00	1.871	14.48	0.00	0.0	0.0	0.0	—	0.87	0.89	0.87	—	1745	0	2	80	9	0	0	logfile
✔	7XD6	33137	2025-02-14	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	23.79	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.009	0.80	0.0	0.04	23.90	0.01	1.827	6.31	0.00	0.0	0.0	0.0	—	1.33	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	8BFB	16019	2025-02-10	2022-10-24	3.2	3.13	3.01	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.005	0.53	0.0	0.05	17.31	0.00	2.629	5.21	1.43	1.4	98.6	0.0	-2.95	1.02	0.51	0.86	6.78	2860	380	10	0	0	0	0	logfile
✔	8TJQ	41308	2025-02-13	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.78	0.0	0.04	24.52	0.01	1.771	21.71	0.00	0.0	0.0	0.0	—	0.17	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	7YG8	33811	2025-02-12	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.008	0.71	0.0	0.04	24.57	0.00	1.803	17.58	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	7XD5	33136	2025-02-13	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	23.20	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.007	0.68	0.0	0.04	23.27	0.00	1.934	4.20	0.00	0.0	0.0	0.0	—	1.36	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7XD4	33135	2025-02-13	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	23.99	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.006	0.79	0.0	0.04	24.53	0.01	1.749	16.03	0.00	0.0	0.0	0.0	—	1.96	0.87	0.79	—	9062	0	2	423	28	0	0	logfile
✔	7TD6	25824	2025-02-11	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.004	0.80	0.0	0.05	18.75	0.00	2.365	10.43	2.35	7.1	92.9	0.0	-3.87	1.31	0.42	0.76	3.81	5575	690	5	0	0	0	0	logfile
✔	8FF3	29037	2025-02-10	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.47	0.0	0.05	11.47	0.00	2.698	4.58	0.00	0.7	99.3	0.0	-1.94	0.46	0.35	0.72	4.33	2190	150	6	0	0	0	1122	logfile
✔	6PoM	20416	2025-02-11	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.006	0.94	0.0	0.05	26.62	0.01	1.998	32.05	0.00	0.0	0.0	0.0	—	1.73	0.75	0.79	—	4937	0	2	230	0	0	0	logfile
✔	7YC8	33736	2025-02-12	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.970	59.75	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	7XD3	33134	2025-02-13	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	24.05	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.006	0.76	0.0	0.04	24.27	0.01	1.714	13.21	0.00	0.0	0.0	0.0	—	1.80	0.87	0.80	—	9062	0	2	423	28	0	0	logfile
✔	7URM	26714	2025-02-10	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.72	0.01	2.028	23.68	0.00	0.0	0.0	0.0	—	1.30	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	7XD7	33138	2025-02-13	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	23.14	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.008	0.75	0.0	0.04	23.35	0.01	1.843	7.12	0.00	0.0	0.0	0.0	—	2.03	0.92	0.92	—	8693	0	2	405	30	0	0	logfile
✔	8oL3	16944	2025-02-11	2023-03-30	3.5	3.67	1.73	4.2	0.009	0.67	0.0	0.06	9.52	0.01	2.263	7.26	0.00	0.0	100.0	0.0	-0.18	0.42	0.77	3.49	4.2	0.003	0.48	0.0	0.06	16.21	0.00	2.589	11.90	2.80	9.0	91.0	0.0	-0.92	0.93	0.33	0.69	4.73	4970	330	10	0	0	0	2500	logfile

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