Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6B3J	7039	2025-02-13	2017-09-22	3.3	3.63	3.26	3.5	0.007	1.00	0.0	0.06	9.89	0.01	2.229	4.37	0.00	4.2	95.8	0.0	0.60	0.66	0.73	2.35	3.5	0.003	0.62	0.0	0.04	14.84	0.00	2.499	8.23	2.47	3.0	97.0	0.0	0.95	1.69	0.69	0.77	1.61	9034	1129	6	0	0	0	0	logfile
✔	7RZU	24778	2025-02-10	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.004	0.48	0.0	0.03	15.71	0.00	2.609	5.88	2.81	0.0	100.0	0.0	5.30	0.49	0.80	0.82	1.76	2439	324	6	0	0	0	0	logfile
✔	7WU2	32817	2025-02-12	2022-02-05	2.8	2.56	—	2.8	0.002	0.51	0.0	0.04	12.86	0.00	2.200	6.51	0.00	2.1	97.9	0.0	0.79	0.64	0.77	2.92	2.8	0.003	0.59	0.0	0.04	15.91	0.00	2.510	5.22	2.27	3.4	96.6	0.0	0.85	1.20	0.68	0.83	3.14	7829	1010	5	0	0	0	0	logfile
✔	7ZR8	14886	2025-02-11	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.42	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	3.8	0.004	0.61	0.0	0.04	13.18	0.00	2.338	7.98	3.71	4.5	95.5	0.0	-1.02	0.50	0.72	0.82	2.28	3693	471	4	0	1	0	0	logfile
✔	8CZi	27098	2025-02-10	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.17	0.00	2.440	4.09	1.68	0.0	100.0	0.0	5.65	0.84	0.82	0.84	1.88	2550	339	6	0	0	0	0	logfile
✔	8Hio	34824	2025-02-12	2022-11-21	3.73	4.15	3.86	4.0	0.005	0.66	0.0	0.04	18.51	0.00	1.744	10.33	0.00	2.8	97.2	0.0	2.22	0.74	0.74	0.93	4.0	0.003	0.69	0.0	0.04	19.67	0.00	1.971	11.89	3.79	1.4	98.6	0.0	1.78	1.70	0.76	0.75	0.81	6681	719	5	47	2	0	0	logfile
✔	7MYN	24081	2025-02-14	2021-05-21	2.79	3.01	2.81	3.2	0.003	0.71	0.0	0.04	14.11	0.00	2.280	7.01	0.26	2.5	97.5	0.0	-0.41	0.65	0.79	2.43	3.1	0.003	0.69	0.0	0.04	17.56	0.00	2.474	10.81	2.15	2.3	97.7	0.0	0.70	0.54	0.63	0.80	2.49	10426	1253	3	0	0	8	0	logfile
✔	6Wi9	21683	2025-02-12	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.38	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.70	0.0	0.04	13.85	0.00	2.404	10.27	0.11	5.9	94.1	0.0	-0.79	0.70	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	7PAG	13269	2025-02-11	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.81	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.05	0.0	0.05	16.71	0.00	2.198	16.59	3.65	9.7	90.3	0.0	-3.16	1.29	0.33	0.67	—	4040	509	2	0	4	0	0	logfile
✔	7F8W	31494	2025-02-13	2021-07-02	3.1	2.94	—	3.2	0.005	1.04	0.0	0.06	14.09	0.01	2.273	8.70	0.00	4.6	95.4	0.0	-1.99	0.54	0.58	1.20	3.1	0.003	0.73	0.0	0.04	16.36	0.00	2.503	16.21	3.69	4.5	95.5	0.0	-1.06	0.62	0.58	0.65	0.87	8486	1087	6	0	0	0	0	logfile
✔	8EQS	28544	2025-02-11	2022-10-09	3.1	3.53	3.10	3.4	0.005	0.74	0.0	0.04	19.17	0.00	2.219	12.31	0.00	2.8	97.2	0.0	0.01	0.66	0.82	2.72	3.4	0.003	0.55	0.0	0.04	18.68	0.00	2.586	5.12	2.32	1.9	98.1	0.0	1.88	1.15	0.69	0.87	2.22	3654	438	6	0	2	0	0	logfile
✔	7XJA	33223	2025-02-12	2022-04-15	3.5	3.35	3.43	3.4	0.003	0.60	0.0	0.04	13.73	0.00	2.182	9.41	0.00	1.5	98.5	0.0	1.81	0.57	0.72	3.01	3.4	0.003	0.68	0.0	0.04	16.01	0.00	2.518	8.59	2.22	3.1	96.9	0.0	2.39	1.79	0.64	0.81	3.25	7276	944	2	0	0	0	0	logfile
✔	7XUN	33475	2025-02-11	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.002	0.66	0.0	0.04	15.86	0.00	2.591	9.01	2.12	4.2	95.8	0.0	-0.22	0.43	0.73	0.77	0.38	5591	741	1	0	0	0	0	logfile
✔	8D9K	27264	2025-02-11	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	16.35	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.004	0.56	0.0	0.04	17.30	0.00	2.258	10.58	2.35	2.4	97.6	0.0	0.60	0.59	0.90	0.86	2.22	5708	546	3	65	0	0	0	logfile
✔	6N3C	0334	2025-02-11	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.008	0.78	0.0	0.04	15.93	0.00	2.490	12.06	7.37	11.2	88.8	0.0	-3.78	1.15	0.54	0.85	4.20	4260	640	20	0	0	0	0	logfile
✔	7M61	23686	2025-02-10	2021-03-25	3.8	3.83	—	4.1	0.005	1.02	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.003	0.78	0.0	0.05	14.92	0.00	2.310	18.29	4.10	12.9	87.1	0.0	-4.93	1.31	0.49	0.74	2.46	1690	230	20	0	10	0	0	logfile
✔	7E7Z	31005	2025-02-12	2021-02-28	3.2	3.35	2.96	3.4	0.002	0.51	0.0	0.04	13.40	0.00	2.240	9.87	0.00	5.6	94.4	0.0	-0.12	0.63	0.81	1.86	3.4	0.003	0.56	0.0	0.04	15.42	0.00	2.602	6.45	1.29	6.1	93.9	0.0	1.70	0.42	0.53	0.79	1.65	7808	992	4	0	0	0	0	logfile
✔	8BPG	16152	2025-02-13	2022-11-16	3.1	3.80	3.06	3.3	0.010	1.11	0.0	0.08	12.89	0.01	2.028	3.14	0.00	6.6	93.4	0.0	-0.90	0.80	0.74	2.23	3.4	0.003	0.70	0.0	0.04	15.03	0.00	2.514	7.04	3.88	5.8	94.2	0.0	-0.44	0.96	0.88	0.85	2.25	8650	1106	10	0	6	0	0	logfile
✔	7QA8	13880	2025-02-11	2021-11-16	2.7	2.20	2.66	2.7	0.009	1.11	0.0	0.06	13.16	0.01	2.323	1.73	0.75	3.3	96.7	0.0	-2.98	0.59	0.79	2.15	2.5	0.003	0.66	0.0	0.04	13.31	0.00	2.617	4.33	3.55	4.1	95.9	0.0	2.54	0.37	0.59	0.81	3.19	6111	622	11	0	38	70	0	logfile
✔	6W8P	21577	2025-02-11	2020-03-21	3.6	4.05	—	4.0	0.004	0.76	0.0	0.04	18.04	0.00	2.236	14.92	10.89	10.4	89.6	0.0	-3.47	0.57	0.80	0.57	3.9	0.004	0.82	1.0	0.04	18.29	0.00	2.278	12.91	8.88	9.7	90.3	0.0	-0.07	1.54	0.56	0.78	0.78	6509	844	4	0	3	0	0	logfile

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