Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QK5	14038	2025-02-14	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.002	0.56	0.0	0.05	17.92	0.00	2.572	1.62	1.37	3.9	96.1	0.0	-1.92	1.64	0.36	0.82	6.93	10485	666	18	0	36	0	5337	logfile
✔	9JSW	61785	2025-02-11	2024-10-01	1.94	1.98	1.45	2.0	0.012	1.76	0.0	0.08	11.15	0.01	2.664	2.34	0.00	5.3	94.7	0.0	-2.00	0.43	0.88	7.60	2.0	0.003	0.63	0.0	0.05	13.96	0.01	2.490	0.23	0.46	4.5	95.5	0.0	-1.91	1.48	0.45	0.90	7.25	4304	280	8	0	0	0	2128	logfile
✔	7MBX	23749	2025-02-13	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	12.16	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.4	0.002	0.58	0.0	0.04	15.19	0.00	2.471	4.33	1.56	1.0	99.0	0.0	1.99	0.51	0.71	0.87	4.31	8433	1065	13	0	2	61	0	logfile
✔	9B73	44299	2025-02-12	2024-03-27	1.96	2.85	2.08	2.6	0.004	0.50	0.0	0.05	14.71	0.01	1.936	6.02	0.36	0.0	100.0	0.0	0.18	0.76	0.90	5.56	2.6	0.003	0.52	0.0	0.04	13.78	0.00	2.011	4.94	0.95	0.9	99.1	0.0	0.82	1.22	0.76	0.90	4.44	8016	978	9	0	15	66	0	logfile
✔	8G17	29664	2025-02-14	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.69	0.0	0.05	15.89	0.01	2.419	1.36	1.52	3.6	96.4	0.0	0.43	1.23	0.72	0.87	6.92	10016	1336	4	0	0	0	0	logfile
✘	9C4o	45192	2025-02-14	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10166	661	2	0	2	111	4883	logfile
✔	8P70	17513	2025-02-11	2023-05-30	2.0	1.98	2.01	2.0	0.006	0.62	0.0	0.04	16.72	0.00	2.202	7.34	0.90	1.3	98.5	0.2	1.67	0.67	0.79	5.37	2.0	0.002	0.54	0.0	0.04	16.47	0.00	2.517	5.48	1.08	1.3	98.5	0.2	2.04	0.22	0.67	0.79	4.82	5282	630	7	0	2	154	0	logfile
✔	8oT6	17171	2025-02-10	2023-04-20	2.0	2.14	1.94	2.0	0.007	1.17	0.0	0.07	11.96	0.01	2.631	0.51	1.52	2.7	97.3	0.0	-2.61	0.47	0.93	7.98	1.9	0.004	0.64	0.0	0.05	16.08	0.00	2.551	2.22	1.21	1.4	98.6	0.0	-1.77	2.61	0.46	0.93	7.45	2870	375	5	0	0	0	0	logfile
✔	8F0J	28758	2025-02-14	2022-11-03	2.0	1.77	1.94	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.004	0.67	0.0	0.04	17.31	0.00	2.428	5.94	1.32	2.4	97.6	0.0	1.25	0.83	0.55	0.79	5.74	9678	1157	12	0	18	25	0	logfile
✔	7QEY	13944	2025-02-14	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.2	0.003	0.69	0.0	0.04	13.46	0.00	2.549	3.68	2.15	2.2	97.8	0.0	3.47	1.01	0.78	0.92	3.81	9467	1092	18	0	30	281	0	logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8P76	17519	2025-02-11	2023-05-30	2.0	1.89	2.02	2.0	0.005	0.61	0.0	0.04	16.64	0.00	2.258	6.57	0.90	1.3	98.5	0.2	1.97	0.66	0.79	5.30	2.0	0.003	0.62	0.0	0.04	16.65	0.00	2.479	5.59	0.90	1.8	98.1	0.2	1.83	0.23	0.66	0.79	5.12	5261	630	7	0	2	151	0	logfile
✔	8PPo	17806	2025-02-10	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	14.12	0.00	2.639	0.29	1.04	0.0	100.0	0.0	1.15	0.38	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile
✔	8Q27	18070	2025-02-12	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.004	0.61	0.0	0.05	17.05	0.00	2.446	0.86	0.51	4.1	95.9	0.0	-1.60	1.19	0.34	0.88	7.19	7002	453	6	0	0	0	3567	logfile
✔	7o6P	12739	2025-02-12	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.003	0.49	0.0	0.04	13.59	0.00	2.613	3.73	0.70	1.8	98.2	0.0	1.80	0.36	0.90	0.92	5.28	8276	1022	8	0	0	268	0	logfile
✔	9CK3	45639	2025-02-11	2024-07-08	2.04	2.11	1.97	2.0	0.004	0.64	0.0	0.05	19.96	0.00	2.532	3.88	2.08	1.5	98.5	0.0	-0.15	0.59	0.90	8.74	2.0	0.008	0.74	0.0	0.07	19.13	0.00	2.632	3.46	4.86	4.5	95.5	0.0	-0.58	0.32	0.59	0.91	8.59	5748	840	12	0	0	0	0	logfile
✔	8SDU	40352	2025-02-11	2023-04-07	2.05	2.16	2.08	2.1	0.002	0.49	0.0	0.04	14.85	0.00	2.231	4.34	0.71	1.0	99.0	0.0	2.05	0.74	0.85	5.13	2.1	0.002	0.53	0.0	0.04	15.07	0.00	2.578	2.55	0.71	0.8	99.2	0.0	2.92	0.24	0.73	0.85	4.74	3942	500	2	0	0	70	0	logfile
✔	8G16	29663	2025-02-14	2023-02-01	2.07	2.69	2.04	2.3	0.004	0.79	0.0	0.05	16.16	0.01	0.795	4.86	1.21	4.1	95.9	0.0	-1.24	0.88	0.91	5.21	2.4	0.004	0.74	0.0	0.05	16.09	0.01	2.036	11.09	1.30	4.2	95.7	0.1	0.77	1.23	0.88	0.91	5.58	10108	1336	4	0	0	0	4	logfile
✔	7QKL	14046	2025-02-11	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.60	0.0	0.05	17.01	0.00	2.619	2.69	1.01	2.7	97.3	0.0	-1.30	2.05	0.44	0.91	8.00	3468	456	6	0	0	0	0	logfile
✔	8G15	29662	2025-02-14	2023-02-01	2.07	2.66	1.97	2.4	0.005	0.96	0.0	0.05	16.07	0.01	2.243	5.30	1.59	5.0	95.0	0.0	-1.62	0.88	0.90	5.37	2.4	0.002	0.55	0.0	0.04	16.19	0.01	2.537	2.60	0.84	3.6	96.4	0.0	0.36	0.33	0.87	0.90	5.70	10056	1336	4	0	0	0	0	logfile

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