Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCC	38239	2025-02-11	2023-12-08	3.2	3.79	3.20	3.6	0.004	0.58	0.0	0.04	19.55	0.00	2.197	6.07	0.21	3.0	97.0	0.0	1.81	0.79	0.87	3.09	3.6	0.004	0.54	0.0	0.04	19.79	0.00	2.553	4.86	3.38	2.3	97.7	0.0	2.62	0.21	0.80	0.87	2.85	5617	546	4	56	0	0	0	logfile
✔	7Y15	33557	2025-02-12	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	7.87	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.003	0.56	0.0	0.04	16.25	0.00	2.432	7.10	2.13	2.4	97.6	0.0	1.39	0.21	0.66	0.85	3.41	8495	1109	6	0	3	0	0	logfile
✔	9BLS	44675	2025-02-12	2024-05-01	2.96	3.23	3.00	3.3	0.003	0.51	0.0	0.04	19.38	0.00	2.224	8.42	3.62	5.9	94.1	0.0	0.28	0.67	0.80	2.45	3.3	0.004	0.56	0.0	0.04	19.45	0.00	2.579	7.30	3.62	5.4	94.6	0.0	0.57	0.21	0.64	0.78	2.18	7112	921	4	0	0	0	0	logfile
✔	8Y86	39035	2025-02-12	2024-02-06	2.75	3.36	2.84	3.3	0.003	0.54	0.0	0.04	15.01	0.00	2.290	2.24	1.25	1.9	98.1	0.0	1.76	0.56	0.81	2.34	3.3	0.003	0.51	0.0	0.04	15.72	0.00	2.627	2.72	1.71	2.0	98.0	0.0	2.24	0.21	0.54	0.79	2.23	8060	1028	4	0	2	0	0	logfile
✔	8oRM	17129	2025-02-11	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.77	0.01	2.606	4.77	1.62	1.1	98.7	0.2	1.62	0.21	0.70	0.82	5.76	5341	632	7	0	2	210	0	logfile
✔	8JEK	36191	2025-02-13	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.006	1.12	0.0	0.07	17.03	0.01	1.790	6.50	2.26	5.2	94.7	0.1	0.27	0.22	0.67	0.87	4.13	8623	1089	5	0	6	0	0	logfile
✔	8DNR	27577	2025-02-14	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.52	0.0	0.05	15.27	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.004	0.52	0.0	0.05	15.48	0.00	2.527	3.51	2.08	2.9	97.1	0.0	0.82	0.22	0.69	0.86	3.83	10191	1314	6	0	12	0	0	logfile
✔	8K6K	36921	2025-02-13	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.35	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.004	1.09	0.0	0.06	17.50	0.00	1.803	6.82	1.36	4.3	95.7	0.0	0.94	0.22	0.76	0.90	4.51	8593	1088	5	0	6	0	0	logfile
✔	8QT6	18644	2025-02-11	2023-10-12	2.29	2.56	2.40	2.6	0.004	0.60	0.0	0.04	18.31	0.00	2.174	4.72	0.86	1.8	98.2	0.0	0.77	0.66	0.84	3.87	2.6	0.003	0.64	0.0	0.04	18.46	0.00	2.551	3.10	0.86	2.3	97.7	0.0	1.44	0.22	0.60	0.81	3.83	3466	399	2	0	3	63	0	logfile
✔	7YNR	33969	2025-02-10	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.003	0.47	0.0	0.05	12.92	0.00	2.618	3.46	0.00	4.2	95.8	0.0	-1.92	0.22	0.41	0.88	5.75	2526	366	6	0	0	0	0	logfile
✔	8T4G	41030	2025-02-12	2023-06-09	3.5	3.76	3.37	3.7	0.003	0.53	0.0	0.04	15.82	0.00	2.254	5.37	0.14	2.2	97.8	0.0	2.80	0.68	0.82	1.39	3.7	0.006	0.62	0.0	0.04	16.60	0.00	2.518	4.50	3.95	1.8	98.2	0.0	2.55	0.22	0.68	0.83	1.54	7721	1089	3	0	0	0	0	logfile
✔	8R4C	18885	2025-02-11	2023-11-13	3.55	2.98	3.52	2.9	0.004	0.72	0.0	0.04	18.00	0.01	2.207	11.23	1.16	9.5	90.5	0.0	-2.95	0.64	0.76	1.62	2.9	0.003	0.70	0.0	0.04	18.41	0.01	2.552	10.09	7.91	8.4	91.6	0.0	-2.92	0.22	0.63	0.76	1.63	4027	553	2	0	0	0	0	logfile
✔	8P70	17513	2025-02-11	2023-05-30	2.0	1.98	2.01	2.0	0.006	0.62	0.0	0.04	16.72	0.00	2.202	7.34	0.90	1.3	98.5	0.2	1.67	0.67	0.79	5.37	2.0	0.002	0.54	0.0	0.04	16.47	0.00	2.517	5.48	1.08	1.3	98.5	0.2	2.04	0.22	0.67	0.79	4.82	5282	630	7	0	2	154	0	logfile
✔	8SNC	40622	2025-02-11	2023-04-27	3.2	3.65	3.41	3.6	0.005	0.60	0.0	0.05	16.85	0.00	2.156	6.81	0.16	4.1	95.9	0.0	-0.17	0.61	0.86	2.85	3.6	0.003	0.83	0.0	0.04	16.78	0.00	2.108	5.36	2.24	4.5	95.5	0.0	0.42	0.23	0.57	0.85	2.79	5927	728	5	0	5	1	0	logfile
✔	7T4N	25681	2025-02-11	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.50	0.0	0.04	16.44	0.00	2.547	4.01	1.25	1.1	98.9	0.0	1.55	0.23	0.66	0.87	3.54	6476	803	2	0	0	0	0	logfile
✔	8EZ7	28729	2025-02-11	2022-10-31	2.6	2.82	2.63	2.8	0.004	0.61	0.0	0.05	18.25	0.00	2.185	8.01	1.32	3.4	96.6	0.0	-0.10	0.51	0.85	3.91	2.8	0.004	0.64	0.0	0.05	15.63	0.00	2.450	7.38	3.20	4.2	95.8	0.0	-0.18	0.23	0.50	0.84	3.95	4927	624	5	0	9	0	0	logfile
✔	8GGR	40018	2025-02-10	2023-03-08	3.4	3.49	3.38	3.6	0.004	0.54	0.0	0.04	13.10	0.00	2.387	2.60	0.00	1.8	98.2	0.0	1.94	0.51	0.84	2.68	3.6	0.003	0.51	0.0	0.04	14.65	0.00	2.517	2.37	1.85	1.8	98.2	0.0	2.21	0.23	0.51	0.84	2.68	2143	281	2	0	1	1	0	logfile
✔	7ZZ0	15030	2025-02-11	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.54	0.0	0.04	16.73	0.00	2.077	3.39	2.40	1.9	98.1	0.0	1.44	0.23	0.92	0.91	4.43	4387	541	2	0	2	84	0	logfile
✔	8V7Z	43011	2025-02-13	2023-12-04	3.4	2.66	3.42	3.5	0.002	0.58	0.0	0.04	19.31	0.00	2.004	11.77	0.41	4.8	95.2	0.0	-0.10	0.50	0.72	1.84	3.5	0.004	0.61	0.0	0.04	19.18	0.00	1.939	9.80	5.87	5.4	94.5	0.1	-0.08	0.23	0.50	0.72	1.83	8977	1104	2	0	10	0	0	logfile
✔	8P76	17519	2025-02-11	2023-05-30	2.0	1.89	2.02	2.0	0.005	0.61	0.0	0.04	16.64	0.00	2.258	6.57	0.90	1.3	98.5	0.2	1.97	0.66	0.79	5.30	2.0	0.003	0.62	0.0	0.04	16.65	0.00	2.479	5.59	0.90	1.8	98.1	0.2	1.83	0.23	0.66	0.79	5.12	5261	630	7	0	2	151	0	logfile

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