Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7D10	30542	2025-02-11	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	14.08	0.00	2.479	7.21	4.38	7.0	93.0	0.0	-1.59	1.20	0.63	0.83	2.89	6424	892	4	0	4	0	0	logfile
✔	8K0X	36780	2025-02-12	2023-07-10	3.2	3.37	3.16	3.4	0.008	1.04	0.0	0.06	9.78	0.01	2.307	1.16	0.00	7.9	92.1	0.0	-6.65	0.67	0.84	4.34	3.4	0.003	0.62	0.0	0.04	13.97	0.00	2.579	3.49	2.94	5.2	94.8	0.0	-1.70	1.26	0.68	0.86	2.51	8447	1084	3	0	1	0	0	logfile
✔	6QM5	4588	2025-02-14	2019-02-01	3.6	3.74	3.61	3.7	0.007	0.83	0.0	0.05	15.76	0.01	2.311	4.02	0.00	4.1	95.9	0.0	-6.65	0.70	0.85	2.84	3.7	0.003	0.63	0.0	0.04	16.88	0.00	2.273	5.03	1.38	3.1	96.9	0.0	-0.35	0.52	0.70	0.84	1.88	10874	1346	4	0	4	0	0	logfile
✘	7DV5	30870	2025-02-13	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	14.00	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9319	1189	2	0	2	0	0	logfile
✔	8iET	35393	2025-02-14	2023-02-15	3.5	3.56	3.44	3.6	0.006	0.88	0.0	0.06	13.90	0.01	2.207	3.18	0.45	5.9	93.9	0.2	-6.60	0.65	0.84	3.54	3.6	0.002	0.59	0.0	0.04	15.41	0.00	2.519	4.28	1.97	3.1	96.9	0.0	-1.63	0.44	0.64	0.83	2.44	10184	1306	2	0	0	0	0	logfile
✔	8GA3	29885	2025-02-11	2023-02-22	3.1	3.32	3.21	3.3	0.005	0.89	0.0	0.05	14.76	0.01	2.294	4.25	0.00	7.0	93.0	0.0	-6.60	0.65	0.81	2.52	3.3	0.004	0.70	0.0	0.04	15.70	0.00	2.515	6.78	1.37	6.6	93.4	0.0	-1.08	0.37	0.60	0.82	1.86	6590	886	4	0	4	0	0	logfile
✔	8iWK	35769	2025-02-12	2023-03-30	3.0	3.18	2.97	3.2	0.010	1.10	0.0	0.06	10.00	0.01	2.313	1.92	0.00	9.2	90.8	0.0	-6.57	0.65	0.83	3.72	3.2	0.003	0.64	0.0	0.04	14.10	0.00	2.581	4.24	2.28	6.4	93.6	0.0	-1.26	1.18	0.65	0.85	2.50	8479	1090	3	0	1	0	0	logfile
✔	6YKP	10829	2025-02-14	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.77	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.003	0.74	0.0	0.04	15.63	0.00	2.308	6.75	1.02	2.4	97.5	0.1	0.60	1.07	0.60	0.86	3.14	10190	1326	9	0	0	7	0	logfile
✔	7V4C	31707	2025-02-10	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.004	0.66	0.0	0.05	17.26	0.00	2.592	4.55	9.85	12.8	87.2	0.0	-4.60	1.15	0.39	0.82	3.46	1287	186	3	0	0	0	0	logfile
✔	6GCT	4386	2025-02-14	2018-04-19	3.85	3.94	3.80	3.9	0.012	1.40	0.0	0.07	14.50	0.01	2.330	6.80	5.57	5.8	93.9	0.2	-6.53	0.67	0.83	1.60	3.9	0.004	0.99	0.0	0.05	15.63	0.00	2.517	11.79	4.89	4.8	95.2	0.0	-2.06	1.27	0.65	0.82	1.68	9672	1299	6	0	0	0	0	logfile
✔	6TQF	10550	2025-02-14	2019-12-16	3.5	3.81	—	3.7	0.007	0.99	0.0	0.05	22.16	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.004	0.67	0.0	0.04	15.20	0.00	1.929	2.24	0.57	4.3	95.7	0.0	-3.34	0.41	0.74	0.90	2.67	10426	1268	4	0	14	0	0	logfile
✔	8GoF	34177	2025-02-11	2022-08-24	3.0	2.97	3.06	3.1	0.006	0.80	0.0	0.05	13.26	0.01	2.269	7.05	0.00	2.5	97.5	0.0	-6.52	0.44	0.81	3.59	3.1	0.003	0.58	0.0	0.04	14.47	0.00	2.635	6.60	1.14	1.7	98.3	0.0	1.88	1.48	0.43	0.82	2.77	3299	407	2	0	1	0	0	logfile
✔	7BSU	30167	2025-02-14	2020-03-31	3.2	3.35	—	3.3	0.006	0.61	0.0	0.04	20.44	0.01	1.626	31.07	7.59	7.6	92.4	0.0	-6.52	0.59	0.85	3.64	3.3	0.003	0.67	0.0	0.04	17.96	0.00	2.063	6.86	3.84	3.8	96.2	0.0	-1.08	0.94	0.64	0.88	3.55	9325	1138	4	0	7	0	0	logfile
✔	9iK4	60648	2025-02-14	2024-06-26	3.34	3.55	3.36	3.5	0.008	1.41	1.0	0.26	19.37	0.01	1.881	9.85	0.00	14.1	85.9	0.1	-6.52	0.55	0.67	2.00	3.5	0.005	0.86	0.0	0.05	18.65	0.00	2.423	10.30	1.67	13.0	87.0	0.0	-3.91	0.65	0.59	0.77	1.95	10114	1214	4	0	4	0	0	logfile
✔	9JF8	61430	2025-02-10	2024-09-04	3.05	3.21	3.01	3.2	0.005	1.05	2.0	0.07	13.51	0.01	1.759	3.98	0.00	8.7	91.3	0.0	-6.51	0.54	0.82	3.74	3.2	0.003	0.73	0.0	0.04	15.83	0.00	2.468	3.36	2.87	8.9	91.1	0.0	-0.36	0.96	0.50	0.82	3.47	3266	395	2	0	1	0	0	logfile
✔	7U15	26278	2025-02-11	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.71	0.0	0.11	15.78	0.00	2.407	10.40	3.97	16.0	84.0	0.0	-5.26	0.91	0.27	0.69	2.87	6684	405	6	0	12	0	3255	logfile
✔	8WP0	37705	2025-02-13	2023-10-08	3.4	3.57	3.31	3.5	0.005	1.11	2.0	0.06	11.22	0.01	1.932	2.88	0.00	7.8	92.2	0.0	-6.50	0.67	0.82	3.23	3.5	0.004	0.72	0.0	0.04	14.74	0.01	2.027	5.34	1.74	7.3	92.7	0.0	-2.93	0.66	0.66	0.85	2.31	9372	1217	2	0	4	0	0	logfile
✔	8GAH	29899	2025-02-11	2023-02-22	2.9	3.08	2.95	3.1	0.005	0.88	0.0	0.05	13.56	0.01	2.280	4.27	0.00	5.9	94.1	0.0	-6.49	0.65	0.83	3.19	3.1	0.003	0.68	0.0	0.04	15.64	0.00	2.503	7.55	1.25	4.3	95.7	0.0	0.08	0.47	0.63	0.84	2.54	6424	864	4	0	4	0	0	logfile
✔	6X2L	22011	2025-02-13	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	2.9	0.004	0.66	0.0	0.04	16.04	0.00	2.529	5.27	2.32	2.4	97.6	0.0	1.06	0.99	0.59	0.88	2.04	9396	1233	3	0	0	0	0	logfile
✔	7C1D	30269	2025-02-10	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.005	0.77	0.0	0.05	15.28	0.00	2.465	14.46	9.38	25.5	74.5	0.0	-5.19	2.82	0.39	0.76	3.47	2034	306	6	0	0	0	0	logfile

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